Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01467 ATGGTGAATGCTGTGACTCACAGTCAGAATCAGTGTGTGCTGTTGTTGAAGTTGAATCCCAATTGCATAAGGAGCAAGAGCAGCAGCAGCGTCTTCCCAAAACCCTATGCCACATTCCCAGCCCTCACCACTCAAATTTGCCACGCCTCTTTCCACCGATTACCTTTCGCTGACACTGTTTCAGACACAAAGCACAGAACCCTTCTAGTTGAGACTTACCATCACCATGACAGCCTCAGAGCCCTACTTGTAAAGCTTGAGAGGGAGGATTCCAACCCCATCAACATACTCGCCCAAGATGGAGATTGGTCCAAAGACCAGTTTTGGGCTGCTGTCAGGTTCCTTAAACATGCCTCAAGGTTCGCCGAAATCCTTCAGGTGTTTGACATGTGGAAGAACATTGAGAAATCTCGGATTAGTGAGTTCAACTATAACAAGATAATAGGCTTGTTATGCGAAGATGAAACGATGGAAGAGGCGTTAGCTGCATTGCAAGAGATGAAAGCTCAAGGTATGAAGCCTTCTTTGGACACTTATAATCCAATAATTCATGGATTATCCAGAGCTGGTAAGTTCAGTGATGCTTTACGGTTTTTTGATGAGATGAAAGAATCTGGCTTAGAGCCAGATTTTGAAACCTATGATGGTCTGATTGGAGCCTATGGGAAATTTCAAATGTATGATGAGATGGGTGAGTGTGTGAAAAAGATGGAGTTGGATGGATGTCCTCCCGATCATATCACTTATAATATACTTATCCAGGAGTATGCTCGAGGTGGGCTACTCCAGAGAATGGAAAAGCTATACCAGAGAATGCTTTCAAAGAGAATGAAATTGCAATCTTATACTTTTGTTGCAATGCTAAAGGCTTACACCACATTTGGGATTGTTGAAAAGATGGAAAATTTTTACAGGAAAGTCTTGAATTCAAAAACATGTGTAGAGGATGATGTGATTAGAAAAATGGCTGAAGTTTATATCAAGAATTACATGTTTTCTCGACTGGAAGACCTGGCACTAGATTTATGTTCGGCATTTGGTGAGAGTGATCTTGTTTGGTGTCTCCGACTCCTTTCTTATGCATGTCTTTTGAGTAAAAAGGGAATGGATATAGTAGTTAAAGAAATGCTAGATTCCAAGATCAATTGGAGTGTTGCTGTTGCAAATATTATCATGTTGGCTTATGTGAAGATGAAAGATTTCAGGCATTTGAGAATTTTACTGTCTCAACTGCCAATCTACCGGGTGCGGCCTGATATTGTCACTGTTGGAATTGTAATGGATGCCAGTAGAATTGGTTTCGATGGTAGAGGAGCTTTAGAATCATGGAGAAGAATGGGCTATCTGGACAGAGTAGTAGAATTGAATACAGATTCTCTGGTCATTACTGCGTTTGGGAAAGGTCATTTTCTTAAAAGCTGTGAAGAAGTGTACTCTTCTCTTCACCCTGAAGACAGAGAAAGGAAAAAATGGACTTACAATGATCTCATTGCTTTATTGTCATGA 1506 0.409 MVNAVTHSQNQCVLLLKLNPNCIRSKSSSSVFPKPYATFPALTTQICHASFHRLPFADTVSDTKHRTLLVETYHHHDSLRALLVKLEREDSNPINILAQDGDWSKDQFWAAVRFLKHASRFAEILQVFDMWKNIEKSRISEFNYNKIIGLLCEDETMEEALAALQEMKAQGMKPSLDTYNPIIHGLSRAGKFSDALRFFDEMKESGLEPDFETYDGLIGAYGKFQMYDEMGECVKKMELDGCPPDHITYNILIQEYARGGLLQRMEKLYQRMLSKRMKLQSYTFVAMLKAYTTFGIVEKMENFYRKVLNSKTCVEDDVIRKMAEVYIKNYMFSRLEDLALDLCSAFGESDLVWCLRLLSYACLLSKKGMDIVVKEMLDSKINWSVAVANIIMLAYVKMKDFRHLRILLSQLPIYRVRPDIVTVGIVMDASRIGFDGRGALESWRRMGYLDRVVELNTDSLVITAFGKGHFLKSCEEVYSSLHPEDRERKKWTYNDLIALLS 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01467 501 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 245 279 IPR002885 -
Vimu6g01467 501 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 175 209 IPR002885 -
Vimu6g01467 501 Pfam Pentatricopeptide repeat domain 164 223 IPR002885 -
Vimu6g01467 501 Gene3D Tetratricopeptide repeat domain 339 501 IPR011990 GO:0005515
Vimu6g01467 501 Gene3D Tetratricopeptide repeat domain 221 338 IPR011990 GO:0005515
Vimu6g01467 501 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 210 244 IPR002885 -
Vimu6g01467 501 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 140 174 IPR002885 -
Vimu6g01467 501 PANTHER OS08G0520200 PROTEIN 43 500 - -
Vimu6g01467 501 Pfam PPR repeat 240 272 IPR002885 -
Vimu6g01467 501 NCBIfam pentatricopeptide repeat 178 210 IPR002885 -
Vimu6g01467 501 NCBIfam pentatricopeptide repeat 144 175 IPR002885 -
Vimu6g01467 501 NCBIfam pentatricopeptide repeat 213 245 IPR002885 -
Vimu6g01467 501 NCBIfam pentatricopeptide repeat 247 278 IPR002885 -
Vimu6g01467 501 Gene3D Tetratricopeptide repeat domain 96 220 IPR011990 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01467 120 446 Glycosyltransferase AT1G05670 22.289 6.09e-17 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01467 - - gmx:100808924 815.839