Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01455 ATGGCATTGCCAATGGTGTCACTTGGTTCTGTCATCTTTCATTCCCTTCCAATTCCACACACTTCACATTTTGTTCCCCGCTTTCCATGTCACTGCTCACTCTCTTCCCATCCTTCTTCTTCACATTCCCTTCGTTGTGCAGAAAGAAGGTATGGAAATTATAGTAGTGAACGACAATTCAGTGTGTGTGTTTTTCTGGCAGATGTTTCTGTGGATATAGCTGTAGAGGAAAAACGGCTCCCGAAAGGAGAAACTTGGTCTGTTCACAAGTTTGGTGGAACCTGTGTGGGAAACTCATCGAGAATAAAGAATGTTGCGGACATAATTATTAATGATGATTCTGAGAGGAAAATTGTTGTGGTCTCTGCAATGTCAAAAGTGACAGATATGATGTATGATCTTATCGACAAGGCTCAATCCCGTGACGAGTCTTATGTTTCTGCCCTGGATGTTGTTTTAGAGAAGCACAGCTCTACTGCATATGACCTAATTGCTGGAGAAGATCTTGCTGCTTTCTTATCGCAGTTGCATCAAGACATCAGTGACCTAAAGGCAATGCTTCAGGCCATATACATTGCTGGTCATGCCACAGAATCCTTTACTGAATTTGTTGTGGGACACGGAGAGTTATGGTCTGCACAGATGTTGTCTTTAGTAATTAAGAAACAAGGGATTGACTGCAAATGGATGGATGCGAGGGAAGTTCTTATTGTAAAACCTACTCGTTCTGATCGAGTTGATCCGGATTACTTGGAATCTGAACGAAGACTTGAGAAGTGGTACTCTCTAAATCCATCTGACGTAATCGTTGCCACAGGATTTATTGCAAGCACACCTCAGAATATTCCTACTACTCTCAAGAGAGATGGAAGTGACTTTTCGGCAGCTATTATGGGTGCTCTCTTTAAGGCTCGCCAGGTCACAATTTGGACAGATGTAGACGGCGTGTATAGTGCAGATCCCAGAAAAGTTGCTGATGCTGTGATTTTGAAGACATTGTCTTATCAAGAAGCATGGGAAATGTCTTATTTTGGTGCTAATGTCTTGCATCCACGCACAATAACTCCAGTTATTCAATATGGCATACCAATCATAATAAGGAATATTTTCAACCTTTCTTCTTCTGGAACAATGATCTGCCATCCTTCTATTATTGATGATGAGGATAAGCTGATATCAAAAAATTATGTCAAAGGCTTTGCAACCATAGACAATGTGGCACTCGTAAATGTCGAGGGAACCGGAATGGCTGGTGTTCCAGGAACTGCTAGCGCTATTTTTTCCGCAGTAAAAGAGGTTGGAGCGAATGTTATTATGATATCACAGGCCAGTAGTGAGCATTCTGTGTGCTTTGCTGTTCCCGAGAAAGAAGTAAAAGCTGTTGCTGAGGTGTTGCAGTCTTTATTTCATGGAGCTTTGGATGCTGGTCGACTTTCTCAGGTTGCCATCCTTCCAAATTGTAGTATTTTGGCAGCTGTAGGCCAGAAAATGGCAAGTACTCCTGGAGTTAGTGCCACCCTTTTCGAAGCATTGGCAAAGGCCAACATCAATGTACGTGCTGTAGCACAAGGTTGTTCTGAATACAACATCACCATAGTTGTAAAGCGAGAGGATTCTATAAAGGCTTTACGTGCAGTTCATTCCAGATTTTATCTCTCAAGAACCACCATAGCAATGGGAATTATTGGGCCTGGATTAATTGGAAGCACACTGATTGACCAGCTAAGCGACCAGGCTGCAGTTCTTAAAGATGATCTTAACATTGATTTGCGTGTGATGGGGATCATGGGTTCTAAGTTGATGCTCCTTGATGATGATAAGGGCATCAACTTAGAGAAATGGAGAGAACTTCGAGAAGAAAAAGGGGAAGTGGCTAATTTGGAAAAATTTGTTCAAAATGTGCATGGAAATCATTTTATACCAAACACTGTGTTAGTGGACTGCACAGCCGACTCCGTCATTGCTAGCAATTACGAAAGTTGGCTATGCAAAGGAATACATGTCATCACTCCCAACAAGAAGGCAAATTCAGGACCACTTGATGAGTATTTGAAATTAAGAGCGCTTCAGAGGCAATCATACACACATTACTTCTATGAAGCTACTGTTGGGGCTGGTCTTCCAATTATCAGCACTTTACGGGGCCTTCTCGAGACAGGTGATAGAATATTGCAAATTGAAGGTATCTTCAGTGGGACTTTGAGTTACATCTTTAACAACTTCAAAGATGGCCGGCTTTTTAGTGAGGTGGTAGCTGAAGCAAAGGATGCAGGTTATACTGAGCCTGATCCAAGGGATGACCTCTCAGGAACTGATGTTGCTAGAAAGGTGATAATTCTTGCAAGGGAATCAGGTTTGAAGCTAGAGCTTTGTGATATTCCCGTTGAAAATCTCGTGCCAGAACCATTAAGAGGCAGTACATCAGCTCAAGAGTTCATGCAGCAGTTACCAAAATTTGATGAGGAATTAGCAGAGAAATTAAAAGATGCAGAGAGTGGTGGAGAAGTGTTGAGATACGTTGGAGTGGTGGACGTGAGAAATAGGAAAGGAGTAGTAGAACTTAGAAGATACAAGAAGGATGATCCATTTGCACAAGTATCAGGATCAGATAACATTATTGCCTTTACAACAACAAGGTACAAAACCCAACCACTCATTGTTCGTGGACCTGGAGCTGGTGCCCAAGTCACTGCTGCCGGAATATTCAGTGACATCTTACGACTTGCCTCCTATCTCGGTGCTCCATCATAG 2751 0.4231 MALPMVSLGSVIFHSLPIPHTSHFVPRFPCHCSLSSHPSSSHSLRCAERRYGNYSSERQFSVCVFLADVSVDIAVEEKRLPKGETWSVHKFGGTCVGNSSRIKNVADIIINDDSERKIVVVSAMSKVTDMMYDLIDKAQSRDESYVSALDVVLEKHSSTAYDLIAGEDLAAFLSQLHQDISDLKAMLQAIYIAGHATESFTEFVVGHGELWSAQMLSLVIKKQGIDCKWMDAREVLIVKPTRSDRVDPDYLESERRLEKWYSLNPSDVIVATGFIASTPQNIPTTLKRDGSDFSAAIMGALFKARQVTIWTDVDGVYSADPRKVADAVILKTLSYQEAWEMSYFGANVLHPRTITPVIQYGIPIIIRNIFNLSSSGTMICHPSIIDDEDKLISKNYVKGFATIDNVALVNVEGTGMAGVPGTASAIFSAVKEVGANVIMISQASSEHSVCFAVPEKEVKAVAEVLQSLFHGALDAGRLSQVAILPNCSILAAVGQKMASTPGVSATLFEALAKANINVRAVAQGCSEYNITIVVKREDSIKALRAVHSRFYLSRTTIAMGIIGPGLIGSTLIDQLSDQAAVLKDDLNIDLRVMGIMGSKLMLLDDDKGINLEKWRELREEKGEVANLEKFVQNVHGNHFIPNTVLVDCTADSVIASNYESWLCKGIHVITPNKKANSGPLDEYLKLRALQRQSYTHYFYEATVGAGLPIISTLRGLLETGDRILQIEGIFSGTLSYIFNNFKDGRLFSEVVAEAKDAGYTEPDPRDDLSGTDVARKVIILARESGLKLELCDIPVENLVPEPLRGSTSAQEFMQQLPKFDEELAEKLKDAESGGEVLRYVGVVDVRNRKGVVELRRYKKDDPFAQVSGSDNIIAFTTTRYKTQPLIVRGPGAGAQVTAAGIFSDILRLASYLGAPS 916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01455 916 Pfam Homoserine dehydrogenase 708 906 IPR001342 GO:0006520
Vimu6g01455 916 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 708 893 - -
Vimu6g01455 916 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 555 730 IPR036291 -
Vimu6g01455 916 NCBIfam aspartate kinase 86 550 IPR001341 GO:0004072|GO:0008652
Vimu6g01455 916 ProSiteProfiles ACT domain profile. 492 569 IPR002912 -
Vimu6g01455 916 SUPERFAMILY ACT-like 477 566 IPR045865 -
Vimu6g01455 916 ProSiteProfiles ACT domain profile. 411 480 IPR002912 -
Vimu6g01455 916 Gene3D - 558 908 - -
Vimu6g01455 916 Gene3D Dihydrodipicolinate Reductase; domain 2 719 890 - -
Vimu6g01455 916 ProSitePatterns Aspartokinase signature. 88 96 IPR018042 GO:0004072|GO:0008652
Vimu6g01455 916 Gene3D - 392 552 - -
Vimu6g01455 916 FunFam Bifunctional aspartokinase/homoserine dehydrogenase 558 735 - -
Vimu6g01455 916 CDD ACT_AKi-HSDH-ThrA-like_1 406 483 - -
Vimu6g01455 916 CDD AAK_AK-HSDH 86 380 IPR041743 -
Vimu6g01455 916 PANTHER - 69 916 IPR011147 GO:0004072|GO:0004412|GO:0009067
Vimu6g01455 916 FunFam Bifunctional aspartokinase/homoserine dehydrogenase 85 382 - -
Vimu6g01455 916 Gene3D - 86 382 IPR036393 -
Vimu6g01455 916 SUPERFAMILY Carbamate kinase-like 86 381 IPR036393 -
Vimu6g01455 916 ProSitePatterns Homoserine dehydrogenase signature. 754 776 IPR019811 GO:0006520
Vimu6g01455 916 FunFam Bifunctional aspartokinase/homoserine dehydrogenase 394 552 - -
Vimu6g01455 916 Pfam Amino acid kinase family 87 368 IPR001048 -
Vimu6g01455 916 Pfam ACT domain 415 469 IPR002912 -
Vimu6g01455 916 CDD ACT_AKi-HSDH-ThrA_2 487 552 - -
Vimu6g01455 916 SUPERFAMILY ACT-like 393 470 IPR045865 -
Vimu6g01455 916 Pfam ACT domain 485 548 IPR027795 -
Vimu6g01455 916 FunFam Bifunctional aspartokinase/homoserine dehydrogenase 719 890 - -
Vimu6g01455 916 Pfam Homoserine dehydrogenase, NAD binding domain 563 700 IPR005106 GO:0016491|GO:0050661
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01455 Vimu-Chr6 13971156 13977958 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01455 K12524 - gmx:100812202 1420.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01455 6 13971156 13977958 Vimu6g01455 6 13971156 13977958 ECH