Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01449 ATGAAGTTTCTACTTGTTGTCCTTCTGGTATTTGTAATTGCTTCATCTAGCTTGTGTGCTGCAGAATATTCAACTTTCGACGTTGTTAGCTACGGTGCCACAGGGAATGGCCAGACTGATGATACAAAGGCTTTCGTGAAAGCATGGAAAGACGTGTGTGGTGCAACTCATCAGACGGCAAAACTTGTCATACCCCAGAATAAAATATTCATGTTGCAACCTCTGTCGCTTAAGGGTCCTTGCAAGCCAGCAACCATTGAAGTTCGGCTTGAGGGGACTGTCATAGCACCTAAAAACAATGGGGATTGGAAATTTTTGGACGAAAAAAAGAAATGGATAGAATTTTCAGACATATCTGGTCTTGTGATTGAGGGAGGAGGGTTGATCGATGGTCAAGGTGCTGCGTGGTGGAACATTGCCGATATCTCCGTCAAGCCCACTGCTCTACATTTCCATAAATGTAAAGATGTAATACTTAGATCGATGCATCACAAGAACAGCCCCAAAAATCATATAAGCATAAACACGTGCAATGGGTTAGAAATCTCCCATGTTCACATCACTGCACCAATGCAAAGTCCAAACACCGACGGGATAGATATCTCTGGATCATCCAACATCTTCATACACTCTTCCATCATTCAAACCGGTGATGACTGCATCGCCATAAACTCGGGTACTTCCTTCGTCAATATAAGTGATATTTTCTGTGGACCTGGCCATGGCATCAGTGTTGGGAGTCTGGGACGTAATGGAGATGATGCCAGAGTTGAGAATATACACGTGCGGAATTGCACCTTCCTGAGAAGTACGAACGGAGTGAGATTGAAGACATGGAGGGGAGGACGGGGTTATGCGAGGAAGATCGTATTTGAAGATATTAAAGTTGTGGGAGTGATGCGGCCGGTGATTATCAACCAGAATTATTTGGGAGTGGTTGACGGGATAAGTGCAGTGAAAATAAGTGACGTCAGTTTCCGGAACGTGAAGGGAACAACCGGCAGTGACAGTGCAGTGGAACTGAGTTGCGATCCGTATGTAGGCTGCAACGACATCGTTTTAGATCATATTTCCATAGTGAAAGAAGACGGAGGTGAAGCAAAGGCATCATGCGCAGGTGCACAAGGGACCTGCTTTCGCTGCAATCCAATCGTCCCTTGTCTTTCCGATTCCCATCTTATCTAG 1185 0.4515 MKFLLVVLLVFVIASSSLCAAEYSTFDVVSYGATGNGQTDDTKAFVKAWKDVCGATHQTAKLVIPQNKIFMLQPLSLKGPCKPATIEVRLEGTVIAPKNNGDWKFLDEKKKWIEFSDISGLVIEGGGLIDGQGAAWWNIADISVKPTALHFHKCKDVILRSMHHKNSPKNHISINTCNGLEISHVHITAPMQSPNTDGIDISGSSNIFIHSSIIQTGDDCIAINSGTSFVNISDIFCGPGHGISVGSLGRNGDDARVENIHVRNCTFLRSTNGVRLKTWRGGRGYARKIVFEDIKVVGVMRPVIINQNYLGVVDGISAVKISDVSFRNVKGTTGSDSAVELSCDPYVGCNDIVLDHISIVKEDGGEAKASCAGAQGTCFRCNPIVPCLSDSHLI 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01449 394 PANTHER - 24 374 - -
Vimu6g01449 394 Gene3D - 14 385 IPR012334 -
Vimu6g01449 394 SMART pbh1 257 278 IPR006626 -
Vimu6g01449 394 SMART pbh1 204 225 IPR006626 -
Vimu6g01449 394 SMART pbh1 227 247 IPR006626 -
Vimu6g01449 394 SMART pbh1 316 343 IPR006626 -
Vimu6g01449 394 SMART pbh1 177 203 IPR006626 -
Vimu6g01449 394 ProSitePatterns Polygalacturonase active site. 234 247 IPR000743 GO:0004650|GO:0005975
Vimu6g01449 394 Pfam Glycosyl hydrolases family 28 57 375 IPR000743 GO:0004650|GO:0005975
Vimu6g01449 394 SUPERFAMILY Pectin lyase-like 10 388 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01449 Vimu-Chr6 13934255 13935967 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01449 1 388 Glycoside Hydrolase AT5G44840 43.003 1.34e-116 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01449 K01184 - jre:108997191 401.364