Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01444 ATGAGCGTGGGGTTGGTAAAAGAAGGAAATGACCATGCCACCCTCACCAACCCTCTTTGGACAATCTCACAGCAAGTTAAGCCACCAACTACACTACAATCCATGGGAGAACGCAGAAATAATTTTCAAGATGGTGTGACAAAAAGAAAGGGTGTGAGGGGTAGAATGGTAAATGAAGATATGGTGGGGGAAATGAGGACTGGCTTTTCCTTATTTAAAGGGAGACGGGATGAGATGAGAAAGCATAGCCAAAGGATGGAAGCAGTGAATGCCTGGGGTAACACGCCGTTGGCCACGGTCGATCCAGAAATCCACGACCTCATTGAGAAGGAGAAGCGTCGCCAGTGTCGTGGAATAGAGCTCATAGCGTCGGAGAACTTCACTTCCTTCGCTGTCATAGAGGCGCTGGGGAGTGCCCTCACCAACAAGTACTCCGAGGGTATGCCCGGCAACCGCTACTATGGTGGCAACGAGTTCATCGATCAGATTGAGAACCTGTGCCGTTCCCGCGCTCTCGAGGCCTTCCATCTCGATCCCTCCCGATGGGGCGTCAACGTCCAACCCTACTCCGGTTCTCCGGCCAACTTCGCCGCCTACACTGCCGTGCTTCAGCCCCACGACCGCATCATGGGTTTGGATCTCCCCTCCGGCGGCCACCTCACCCACGGCTACTACACCTCCGGTGGGAAGAAGATCTCTGCCACCTCCATTTACTTCGAGAGTTTGCCTTACAAGGTGAATTCCACCACTGGATTCATCGACTACGATAGGTTGGAGGAGAAAGCCTTGGATTTCCGCCCCAAGCTGATCATCTGTGGTGGCAGTGCCTACCCCAGGGACTGGGACTATGCCAGGTTCAGACAGGTAGCCGACAAGTGCGGTGCTCTCTTGCTTTGTGACATGGCTCACATCAGCGGTCTTGTTGCTGCTCAGGAAGCTAACAATCCATTCGAGTACTGTGACATTGTGACCACGACGACCCACAAGAGCTTGAGGGGTCCTAGGGCCGGTATGATCTTCTACCGGAAGGGACCTAAACCGCCGAAGAAAGGGCAAGCCGAGAATGCAGTGTACGATTTTGAAGACAAAATCAACTTTGCGGTGTTCCCTTCCCTCCAGGGTGGTCCTCACAATCACCAGATTGGGGCACTTGCGGTTGCATTGAAACAGGCTAATAGCCCAGGATTCAAGGCATACGCGAAGCAGGTTAAGGCGAATGCAGTTGCACTTGGAAATTATTTGATGAGCAAGGGATACAGTCTTGTCACCGGAGGAACTGAGAACCACCTTGTCTTGTGGGATCTCCGTCCTCTTGGCCTAACTGGCAACAAGGTAGAGAAACTTTGTGACCTCTGCAACATTACCGTCAATAAAAATGCTGTCTTTGGTGATAGCAGCGCATTGGCTCCTGGAGGAGTACGAATTGGTAACACCTCTTCCAAACTTTTGAATCTAATGCGTTTAGAGTTTAAGGCGAACTACATTCATAGAATAGAAACTTCATTAGCAGAATTCATAATTTTGCATGAGTACTTGACAGGAGTTTGTGATCTGTTAACAGGTGCCCCAGCCATGACTTCTAGGGGGTTGGTTGAGAAGGACTTTGAACAGATTGGAGAGTTCCTTCACCGGGCAGTGGTTCTAACGCTGGAGATCCAGAAGGAGTATGGCAAGCTTTTGAAGGATTTCAACAAGGGCCTGGTGAACAATAAGGCTATTGAAGATCTCAAAGTTGATGTTGAGAAATTTTCAGCCTCCTTCGATATGCCTGGTTTCCTAGTATCTGAGTTGAAGTACAAGGACTAG 1806 0.5011 MSVGLVKEGNDHATLTNPLWTISQQVKPPTTLQSMGERRNNFQDGVTKRKGVRGRMVNEDMVGEMRTGFSLFKGRRDEMRKHSQRMEAVNAWGNTPLATVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDQIENLCRSRALEAFHLDPSRWGVNVQPYSGSPANFAAYTAVLQPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSTTGFIDYDRLEEKALDFRPKLIICGGSAYPRDWDYARFRQVADKCGALLLCDMAHISGLVAAQEANNPFEYCDIVTTTTHKSLRGPRAGMIFYRKGPKPPKKGQAENAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQANSPGFKAYAKQVKANAVALGNYLMSKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGNTSSKLLNLMRLEFKANYIHRIETSLAEFIILHEYLTGVCDLLTGAPAMTSRGLVEKDFEQIGEFLHRAVVLTLEIQKEYGKLLKDFNKGLVNNKAIEDLKVDVEKFSASFDMPGFLVSELKYKD 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01444 601 Pfam Serine hydroxymethyltransferase 98 479 IPR039429 -
Vimu6g01444 601 ProSitePatterns Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 321 337 IPR019798 GO:0030170
Vimu6g01444 601 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 87 593 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Vimu6g01444 601 Gene3D Aspartate Aminotransferase, domain 1 101 480 IPR015422 GO:0003824
Vimu6g01444 601 SUPERFAMILY PLP-dependent transferases 87 479 IPR015424 -
Vimu6g01444 601 SUPERFAMILY PLP-dependent transferases 521 593 IPR015424 -
Vimu6g01444 601 CDD SHMT 98 546 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Vimu6g01444 601 Gene3D - 126 401 IPR015421 GO:0003824
Vimu6g01444 601 Hamap Serine hydroxymethyltransferase [glyA]. 96 591 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Vimu6g01444 601 FunFam Serine hydroxymethyltransferase 126 401 - -
Vimu6g01444 601 Gene3D Aspartate Aminotransferase, domain 1 518 589 IPR015422 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01444 Vimu-Chr6 13921475 13923732 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01444 K00600 - gmx:100815417 895.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01444 6 13921475 13923732 Vimu6g01444 6 13921475 13923732 ECH