Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01442 ATGAGTAGAAAGAAGAGTGACACCGTTGATAAAATGCTGATCAAGGGCATCCGGAGTTTCGACCCGGAGAACAAGAACGTCATCACCTTCTTCAAGCCCTTAACCCTAATCGTTGGTCCCAACGGTGCCGGCAAGACCACCATCATCGAGTGCTTGAAGCTTTCCTGCACCGGCGAGTTGCCTCCTAACGCCAGGTCTGGCCACAGTTTCATCCACGACCCCAAGGTCGCTGGGGAAACCGAAACCAAGGGACAGATTAAGCTCCGATTCAAGACGGCCGCCGGTAAAGACGTCGTCTGCGTCAGGTCCTTTCAGCTTACGCAAAAGGCCTCTAAAATGGAATACAAGGCTATTGAGAGTGTGATTCAAACCATTAGTCCTCATACTGGAGAGAAAGTTAGCCACAGCTATCGATGCGCTGACATGGATAAAGAAGTTCCTGCGCTCATGGGTGTTTCCAAGGCCATTCTCGAAAATGTCATATTCGTTCACCAAGATGAAGCCAACTGGCCCCTACAGGATCCTTCCACCTTAAAGAAGAAGTTCGACGACATCTTTTCGGCAACTCGATACACTAAGGCATTGGAAGTTATAAAGAAACTTCACAAGGAGCAGGCTCAAGAGATAAAGACTTACAAGCTCAAACTGGAACATCTTCAAACTCTCAAAGATGCTGCTTATAAGCTACGGGAAAGCATTGCACACGATCAAGAGAAAACAGAGTCTGTAAAGTGTCAAGTACTGGAGTTGGAAGATAGCATTAAACAGTTGGAGGATAAAATTCATCATGCAGAGGAAACGTTAAAAGATTTGCGGAAGCTGCAAGAGCAGATATCAACTAAAACGGCTCAGCGAAGCACCCTGCTTAAGGAACAAGAGAAGCAACATGCTGCTCTTGTTGAGGAGAATGTAGATTCTGATGAGTTATTGATGGAATGGAAGACCAAGTTTGAAGAAAGGATTGCAATTTTAGAAGCAAAGATAAGAAAGTTGAAAAGAGAATTTGATGATGCTACCGAGAAAGGTACTGCCCTCACAAAGATCAACGATCGGACCATCAACGAGATTGCCAAACTACAAGTGGAAGCAGGAGTTCACATGTCTTTGAAGAATGAGCGTGATTCCTCCATTCAAGATCTTTTTACTACATATAGTTTAGGGTCTCTTCCAAATTCTCCTTTCAGTGATGAGGTTGCTTTAAATCTCTCTAGGCGTGTAAAATTGAGGTTGGCAGATCTGGAGAAAGATCTGGATGATAAAAAGAAAGCAAATGACAAGGAACTTGAGATGGCATGGAAATGCTACATGAATGCTAATGACCGATGGAAATATACTGAGGCTAAAATAAAGGCTATGCAAGGGATCAAGGAAGGCAATTTGAAGCGCATCAAAGAGAAGAAAAACGAGCTCGATTCGTCTGAACTTGAAATGACTGATGTGAACTTATCTCACATAGATGAAAGAGAAAGAAATTTGAAAAATGAGATTGAGAGGAAGGAAAGTCAACTATCTCATAGACAATTTGAAACCACTATACGTCAAATGCAAAATGAGATATATAGTGTAGATCAAAAGATTAAGGCTGTCAGTCGGGAGAAGGATATCATGACTGCTGATTCAGAGAACAGAGTTATGCTATCTCATAAGAAAGCAGAGTTGGAAAATCGGAAAAAGAAACATAAAAAGATATTTGATGACCATAAGGACAAAATTAGAAAGGTGCTGAAAGGGAGGGTTCCTCTTGATAAGGATGTGAAAAAGGAAATTACTGAAGCATTAAGGGCTGTTGGAGTGGAATTTGATGATGTGAAAGAAAAGCACCGCGATGCTGAGAAGGAAGTCAATATGTTGCAAATAAAAATACAAGAAGTTAATGCAAGAAAGAGATTTATTGAATCGAAGCTTCAGTCTTTGGATCAGCAATGTTCTGGACTTGATTGTTATCTCAAAGTTTTAGAGTCTTCCAAGGAAAAAAGAGATGTACAGCGAAGTGTTGATGTTGTTTTTGTGACCATATCAAAGTTGTCTCTGGACTTGATGTTGTCACTGATGTTTGATCCTTTTGAAAGGGTTGCCAGAGCTCATCATGTTTGCCCTTGCTGTGAGCGGCCTTTCTCTCCAGAAGAAGAAGACAATTTTGTCAAGAAGCAAAGAGTGAAGGCAGCTAGTTCAGCTGAACATATGAAAGTTCTCGCTGTAGAATCCTCAAATGCAGAGTCTCATTTTCAGCAGCTGGACAAGCTTAGGATGGTTTACGAAGAATATGTTAGACTTGGCAAGGAGACCATCCCTAATACTGAAAAGGAACTTCAGCAACTTAAAGATGAGATGTACGAGAAATCTCAGGCTCTTGATGATGTTTTATGTGTTTTAGCACAAGTGAAGACTGACAAGGATTTAGTTGACACATTGGTGCAACCTGTTGAAAATGCTGATCGGCTTTTCCAAGAAATTCAAGATTTGAAAAAGCAAGTTGAGGATTTAGAAGATAAGCTTGATTTTCGAGGACAGGGAGTGAGGACTCTTGAAGATATTCAACTGGAGCTTAACACCCTGCAGAGCACCAAGGACAATTTGCAATCTGAATTGGAGAGGTTGAGGAAAGAACAAAGGCATATGGAGAATGATCTATCAAATATTCATATTCGGAGGCTCAATCTAAAGGAGGAGAAATTGAAAGCAACCAATTTATTGCAAAGTGTTAAGAAATTAGAAGAAGAATTGGAACGTTTAACTGAAGAAAATACTCAAGTTAATCTTGATGAGAAGCATTTGGCAGATGATCTCGGATCTTTTTCCAGTGAGAAAGATAAATTACTGGCTGACCATAATGATATGAAAATTAGACTCAACCGTGAGTACGAGGACCTGGCTGAGCAAAAGAGAAGTTATCAGCAAGAAGCTGAATCACTTTTCAGAATGAATTCTAAGATCAAAGAGTATTCCGATTTAAAGAAAGGAGATACGTTGAAGGAACTGCAGGAAAAGAATTCTCTATTACAATCTCAACTTCAAAGTTGTGCTTCCAGGAAGCAGGAAATTTCAGCTGAGTTAGACAAAAGTAAAGATTTGATGCATAATCAAGATCAGTTAAGAAGAAAAATTGATGACAACTTAAATTATAGGAAAACTAAGGCTGAAGTAGATGAGCTAGCACATGAAATTGAAACACTAGAAGAAAATATATTAAAGGCTGGTGGGATCTCTACAATTGAAACTGAACGCCAGAAACTATCACAGGAGAGGGAGAGACTTCTTTCAGAGGTAAACCGGCGCCGTGGAACAATGTCTGTTTACGAAAGCAATATTTCCAAAAATAAGGTTGATCTTAAGCAGACTCAATACAAGGACATAGATAAGCGATACTTCGACCAGCTTATCCTGCTTAAGACAACTGAAATGGCCAACAAGGATCTGGACAGATACTACAATGCACTTGATAAGGCACTGATGCGCTTCCACACAATGAAAATGGAAGAGATCAACAAAATTATTAGGGAGTTGTGGCAGCAAACCTATAGGGGGCAAGACATAGACTACATCAGTATTCATTCTGACTCTGAAGGTGCAGGGACCCGTTCCTACAGTTACAAGGTTGTTATGCAGACTGGTGATGCAGAGTTGGAGATGAGAGGAAGATGTAGTGCTGGTCAAAAGGTTCTGGCGTCTCTTATCATACGTTTAGCACTGGCCGAAACGTTTTGTCTCAATTGTGGAATACTTGCGCTGGATGAACCTACCACAAATTTGGATGGACCAAATGCTGAAAGTCTGGCTGCAGCTCTTGTAAGGATCATGGAGGACAGGAAAGGACAGGAAAATTTTCAGTTAATTGTAATCACTCATGATGAACGTTTTGCTCAACTGATTGGTCAGCGCCAGCATGCAGAAAGATATTATCGTGTCTCCAAAGATGATCTGTAA 3924 0.4065 MSRKKSDTVDKMLIKGIRSFDPENKNVITFFKPLTLIVGPNGAGKTTIIECLKLSCTGELPPNARSGHSFIHDPKVAGETETKGQIKLRFKTAAGKDVVCVRSFQLTQKASKMEYKAIESVIQTISPHTGEKVSHSYRCADMDKEVPALMGVSKAILENVIFVHQDEANWPLQDPSTLKKKFDDIFSATRYTKALEVIKKLHKEQAQEIKTYKLKLEHLQTLKDAAYKLRESIAHDQEKTESVKCQVLELEDSIKQLEDKIHHAEETLKDLRKLQEQISTKTAQRSTLLKEQEKQHAALVEENVDSDELLMEWKTKFEERIAILEAKIRKLKREFDDATEKGTALTKINDRTINEIAKLQVEAGVHMSLKNERDSSIQDLFTTYSLGSLPNSPFSDEVALNLSRRVKLRLADLEKDLDDKKKANDKELEMAWKCYMNANDRWKYTEAKIKAMQGIKEGNLKRIKEKKNELDSSELEMTDVNLSHIDERERNLKNEIERKESQLSHRQFETTIRQMQNEIYSVDQKIKAVSREKDIMTADSENRVMLSHKKAELENRKKKHKKIFDDHKDKIRKVLKGRVPLDKDVKKEITEALRAVGVEFDDVKEKHRDAEKEVNMLQIKIQEVNARKRFIESKLQSLDQQCSGLDCYLKVLESSKEKRDVQRSVDVVFVTISKLSLDLMLSLMFDPFERVARAHHVCPCCERPFSPEEEDNFVKKQRVKAASSAEHMKVLAVESSNAESHFQQLDKLRMVYEEYVRLGKETIPNTEKELQQLKDEMYEKSQALDDVLCVLAQVKTDKDLVDTLVQPVENADRLFQEIQDLKKQVEDLEDKLDFRGQGVRTLEDIQLELNTLQSTKDNLQSELERLRKEQRHMENDLSNIHIRRLNLKEEKLKATNLLQSVKKLEEELERLTEENTQVNLDEKHLADDLGSFSSEKDKLLADHNDMKIRLNREYEDLAEQKRSYQQEAESLFRMNSKIKEYSDLKKGDTLKELQEKNSLLQSQLQSCASRKQEISAELDKSKDLMHNQDQLRRKIDDNLNYRKTKAEVDELAHEIETLEENILKAGGISTIETERQKLSQERERLLSEVNRRRGTMSVYESNISKNKVDLKQTQYKDIDKRYFDQLILLKTTEMANKDLDRYYNALDKALMRFHTMKMEEINKIIRELWQQTYRGQDIDYISIHSDSEGAGTRSYSYKVVMQTGDAELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALVRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAERYYRVSKDDL 1307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01442 1307 Coils Coil 990 1010 - -
Vimu6g01442 1307 Coils Coil 202 222 - -
Vimu6g01442 1307 Coils Coil 887 921 - -
Vimu6g01442 1307 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 26 1289 IPR027417 -
Vimu6g01442 1307 Coils Coil 600 641 - -
Vimu6g01442 1307 Gene3D - 1069 1306 IPR027417 -
Vimu6g01442 1307 Coils Coil 1068 1088 - -
Vimu6g01442 1307 Coils Coil 550 570 - -
Vimu6g01442 1307 Coils Coil 1041 1061 - -
Vimu6g01442 1307 Coils Coil 512 532 - -
Vimu6g01442 1307 Coils Coil 940 974 - -
Vimu6g01442 1307 NCBIfam rad50 9 1305 IPR004584 GO:0000723|GO:0005634|GO:0006281|GO:0016887|GO:0030870
Vimu6g01442 1307 Coils Coil 240 291 - -
Vimu6g01442 1307 Pfam Rad50 zinc hook motif 691 727 IPR013134 -
Vimu6g01442 1307 Coils Coil 756 783 - -
Vimu6g01442 1307 FunFam DNA repair protein RAD50 1150 1307 - -
Vimu6g01442 1307 FunFam DNA repair protein RAD50 8 305 - -
Vimu6g01442 1307 Pfam AAA domain 12 262 IPR038729 GO:0006302|GO:0016887
Vimu6g01442 1307 Gene3D - 9 252 IPR027417 -
Vimu6g01442 1307 Coils Coil 842 883 - -
Vimu6g01442 1307 Coils Coil 314 341 - -
Vimu6g01442 1307 Coils Coil 808 831 - -
Vimu6g01442 1307 PANTHER RAD50 8 1306 - -
Vimu6g01442 1307 Coils Coil 463 502 - -
Vimu6g01442 1307 Coils Coil 403 430 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01442 K10866 - gmx:100818545 2014.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01442 6 13905614 13914716 Vimu6g01442 6 13905614 13914716 ECH