Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01438 ATGGATCGAATGGTTTCTCCGCCGGACACCAGCAAGAGCATAAAGCTGGAGAGATACAACAGCTACATCAGGAGAGTCAACAGCACCAAGCTGCTAAACGCCTCTTCCAAGCTCCTCTTCCGCGCCACCCTCCTCGTCGCTCTCATCCTCGTATTCCTCTTCACCTTCAACTACCCTCCCCTCGCCGACACCACCCACCGCCATCTCCACGCCCACTCCCACTTCCTCTCCTCCGCATTCGGCGCCTGGGAGAAGCAGGTGCGCCACTCCTCCACTCCTCGCCGGCCCAACGGCCTCACCGTTCTCGTCACCGGGGCGGCGGGCTTCGTGGGCAGCCACTGCTCCCTTGCCCTTAAAAGACGAGGGGACGGGGTGCTGGGTCTCGACAACTTCAACTCCTACTACGACCCCTCCTTGAAGCGCGCTCGCCAAGCAATGCTGGCCAAGCACCAGGTTTTCATCGTGGAAGGTGACCTCAACGACACGCCCTTGCTCCGGAAGCTCTTCGACGTCGTCGCCTTCACCCACGTCCTCCACCTCGCCGCCCAGGCCGGCGTCCGCTACGCCATGCAGAACCCCCAGTCCTACATCACCGCCAACATTGCAGGCTTCGTCAACCTTCTCGAAGTTTCCAAATCCGCCAACCCCCAGCCCTCCATAGTCTGGGCTTCCTCCAGCTCCGTCTACGGCCTCAACACTCAGAACCCCTTCTCGGAGCTCCACCGGACCGACCAACCCGCCAGCCTCTACGCCGCCACCAAGAAAGCCGGGGAGGAAATCGCCCACACCTACAACCACATATACGGCCTCTCCCTCACCGGCCTCCGCTTCTTCACGGTGTACGGCCCCTGGGGGAGACCCGACATGGCCTACTTTTTCTTCACCAAAGACATCCTCCAGGGGAAGACCATCGACGTGTACGAGACGCAGGACGGGAAGCAGGTGGCGCGTGACTTCACCTACATCGACGATATCGTGAAGGGGTGCCTCGGGGCTCTGGACACCGCCGAGAAGAGCACCGGGAGCGGTGGGAAGAAGCGTGGGCCAGCCCAGTTGAGGATTTACAATCTGGGCAACACCTCCCCGGTTCCGGTGGGGAACTTGGTCTCCATTCTTGAAGGGTTGCTGAACACCAAAGCCAAAAAGCACGTGATCAAGATGCCTTCGAACGGCGACGTCCCCTACACACACGCCAATGTGAGCCTGGCCTTCCGCGATTTCTCTTACAAACCCACGACCGATCTCCCCACCGGTCTCCGGAAGTTCGTGAAATGGTACGTCGGTTATTACGGACCCCACCTGAGGATCAAAAGGGAATCTCTTCTTGACAACTGA 1335 0.5993 MDRMVSPPDTSKSIKLERYNSYIRRVNSTKLLNASSKLLFRATLLVALILVFLFTFNYPPLADTTHRHLHAHSHFLSSAFGAWEKQVRHSSTPRRPNGLTVLVTGAAGFVGSHCSLALKRRGDGVLGLDNFNSYYDPSLKRARQAMLAKHQVFIVEGDLNDTPLLRKLFDVVAFTHVLHLAAQAGVRYAMQNPQSYITANIAGFVNLLEVSKSANPQPSIVWASSSSVYGLNTQNPFSELHRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYETQDGKQVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKRGPAQLRIYNLGNTSPVPVGNLVSILEGLLNTKAKKHVIKMPSNGDVPYTHANVSLAFRDFSYKPTTDLPTGLRKFVKWYVGYYGPHLRIKRESLLDN 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01438 444 FunFam UDP-glucuronate 4-epimerase 3 100 431 - -
Vimu6g01438 444 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 93 430 IPR036291 -
Vimu6g01438 444 Pfam NAD dependent epimerase/dehydratase family 101 339 IPR001509 -
Vimu6g01438 444 Gene3D - 278 426 - -
Vimu6g01438 444 PRINTS Nucleotide sugar epimerase signature 352 367 - -
Vimu6g01438 444 PRINTS Nucleotide sugar epimerase signature 127 143 - -
Vimu6g01438 444 PRINTS Nucleotide sugar epimerase signature 317 332 - -
Vimu6g01438 444 PRINTS Nucleotide sugar epimerase signature 392 409 - -
Vimu6g01438 444 Gene3D - 102 413 - -
Vimu6g01438 444 PANTHER EPIMERASE-RELATED 83 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01438 Vimu-Chr6 13889140 13893678 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01438 9 440 Miscellaneous Gene Families AT3G23820 79.866 0.0 728
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01438 K08679 - gmx:100786653 800.816
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01438 6 13889140 13893678 Vimu6g01438 6 13889140 13893678 ECH