Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01433 ATGATGAAGAAGAAGAAACAGGTACCGGAGTGGATGAACAGTTCTCTGTGGTCCTCCCCCTCCGATCACCACCGCTTTAGCCCGCCCTCTCCTCCTCCTCCTCCTCCTCCGCCTCCTCCTCCTCCGCCTCCTCCCGTTTCTGTCAGAGAAGATCCTCCAACTAATCACAATGCCTCTCCTTCTTCTTCGTCCGTCGACTCTTCTGCTTCTGCATTCTCCGCCGCCGATGACATCTCCTCTCAGGCTCAATTGTTGACCGAGTTATCTAGGAAGATGATAGACATGCGCGAGTTGAGGAGAGTCGCTTCTCAAGGTATTCCTCGTGCCGCCGCCTCTGCTTTACGCCCTACGCTCTGGAAGCTTTTGCTTGGATATCTTCCTACCGATCGTGCCCTTTGGTCCTCTGAATTAGCCAAGAAAAGGTCCCAGTACAGACAATTCAAAGATGACCTCCTCATGAATCCTTCAGAAATCACGAGGAGGATCTACAACTCCGCTGCTCATGACATCGATGATGCAAAATCTGAGACTCGTATCTTGCTTTCTAGATCACAAATCACTCATGAGGATCACCCTTTGAGTCTTGGCAAGACCAGCATATGGAATCAATTCTTCCAGATACAGTATTCTCAATTGCGTGCTAAGTTTCTGGACACAGAGCTCATAGAGCAGATTGATCGTGATGTAAAACGTACTCATCCAGATATACAGTTCTTCTCCGGTGATTCTCAATTGGCAAAATCTAATCAGGATGCTTTAAAGAACATATTAATTATTTTTGCAAAGTTGAACCAAGGTATAAGATACGTTCAAGGGATGAATGAAGTAGTGGCCCCTCTCTTCTATGTGTTCAAAAATGACCCCGATGAGGAAAATGCTGCTATTAATTTTCATGTTTCTCTTATATACAGAGAAGGAAATAAATGTGATGACAGACCTGGTGATTCGGGTTTGGATTCCAGGGTAGAGTTTGCTTGGTATGGTAGGTTGCCCACTTGTTTTACTCGGGACTTTTTTAGGAACCGGTATGGGCTACCAGGTTTTCTTGATTGCTGCATGGGTTTAGTGTTGACCCCAATGGCCTTTGCTGAAGCAGACACATTCTTTTGTTTTGTTGAGCTATTGAGTGGGTTCCAAGATAATTTTTGTCAACAACTTGATAATAGTATTGTTGGAATCCGTTCCACTATTACAAGATTGTCCCAGCTTTTAAAAGAACACGATGAAGAACTGTGGCGTCATCTTGAGGTTACTACTCAGGTCAATCCCCAATTCTATGCATTTAGGTGGATTACTCTCCTCTTGACTCAAGAATTTAATTTTTCTGACATCCTCTATATTTGGGACGTCATTTTAAGCGATCCAGAGGGTCCACAGTTTATAGCATCTTTTCTGAAAGGAAAGATGATTAGAACAAGGTCGAAGTTACTTCCTTTTGTGTTTTCGCTTGAGAAAACTAGGGAAACACTTCTTAGAATATGCTGCGCAATGCTAATTCTCGTCCGTAGGCGCCTCCTAGCGGGCGATTTCACTTCTAACCTCAAGTTGCTGCAAAGTTATCCATCTACAAACATCAGTCATTTGCTCCATGTGGCAAACAAGTTACGTGTACAGTCAGGCTAA 1623 0.4405 MMKKKKQVPEWMNSSLWSSPSDHHRFSPPSPPPPPPPPPPPPPPPVSVREDPPTNHNASPSSSSVDSSASAFSAADDISSQAQLLTELSRKMIDMRELRRVASQGIPRAAASALRPTLWKLLLGYLPTDRALWSSELAKKRSQYRQFKDDLLMNPSEITRRIYNSAAHDIDDAKSETRILLSRSQITHEDHPLSLGKTSIWNQFFQIQYSQLRAKFLDTELIEQIDRDVKRTHPDIQFFSGDSQLAKSNQDALKNILIIFAKLNQGIRYVQGMNEVVAPLFYVFKNDPDEENAAINFHVSLIYREGNKCDDRPGDSGLDSRVEFAWYGRLPTCFTRDFFRNRYGLPGFLDCCMGLVLTPMAFAEADTFFCFVELLSGFQDNFCQQLDNSIVGIRSTITRLSQLLKEHDEELWRHLEVTTQVNPQFYAFRWITLLLTQEFNFSDILYIWDVILSDPEGPQFIASFLKGKMIRTRSKLLPFVFSLEKTRETLLRICCAMLILVRRRLLAGDFTSNLKLLQSYPSTNISHLLHVANKLRVQSG 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01433 540 SMART tbc_4 102 480 IPR000195 -
Vimu6g01433 540 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 87 414 IPR035969 -
Vimu6g01433 540 MobiDBLite consensus disorder prediction 1 68 - -
Vimu6g01433 540 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 205 383 - -
Vimu6g01433 540 MobiDBLite consensus disorder prediction 25 50 - -
Vimu6g01433 540 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 392 537 IPR035969 -
Vimu6g01433 540 Pfam Rab-GTPase-TBC domain 209 286 IPR000195 -
Vimu6g01433 540 Pfam Rab-GTPase-TBC domain 363 462 IPR000195 -
Vimu6g01433 540 MobiDBLite consensus disorder prediction 52 68 - -
Vimu6g01433 540 ProSiteProfiles TBC/rab GAP domain profile. 109 455 IPR000195 -
Vimu6g01433 540 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 66 518 - -
Vimu6g01433 540 Gene3D - 391 539 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01433 Vimu-Chr6 13846787 13854814 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01433 K24796 - oeu:111390644 424.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01433 6 13846787 13854814 Vimu6g01433 6 13846787 13854814 ECH