Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01431 ATGGACCTGCTGGAATTGGAGGCGGTGGAAGGGCTCCGGTGGACGTGGAATTCGTGGGCGGCGGAGGGGACGAATCTGGTGATCCCTCTGAGCATAATGTGTAGTCCATTGATGGTGAGTGAGGTCCCTATCCTCCCATACCACCCTCTTCTCTGTTCGCGATGCGCTGCCGTTTTGAACCCCTACGCACGCCTCGACTACCAGTCCCGCATCTGGCACTGCCCCTTCTGCTTCCTCCGCAACCCCTTTCCCCGCCCCATCGCCGACACCAACCTCCCTGCCGAACTCTTCCCCACCTACAGCACTGTCGAGTACTCTCCTTCTCCCCCCTCCTCCTCTCCCCCTCCCCCTCCCCCCGCCTTCGTCTTTCTCGTCGATCTTTCCTCCCCCGACGACCAACTGCTCTCCCTCAAGAAGGACCTCCTCCTCCTCCTCCACCACCACTTTCCCGATCACGCCCTCGTCGCTCTCCTCACCTTCGATTCCATGGTCTATCTCCACCATCTCGCCTCTTCCCCCTGTTCCTCCCTCCACCTCTTTCACGGCAGCCGCCATCTCTCCTCCAATCAGATCCGCCAGTTCCTCAACATCGGCCGCCCCCACCCGCTGCATCACGGACACACCCCAAAACAGGATTTTCTGTTGCCATTTTCCGAATGTGAATTCTCCATCACTTCTGCAATTGAAGACATCCATTCCACATTCGACTCCACCTCCGCCACTCGCCCTCCAAGATGCACCGGCACTGCCATTTCCGTCGCCCTCGGACTTCTAGAGTCTTGCCTTGTCACCACAGGCTCCAGGATCATGCTCTTCACCTCCGGACCTGCCACTATCGGACCCGGAATCGTTGTTGATTCTGATCTCCGCCAACCCATCAGAACCCACCATCACATCTTCAACAACCAAGCCAGACACCACGCCAACTCTTGCTCTTTCTATAACCAACTCTCCAAGAGACTATCTGATGCGTCTGTTATTCTTGATCTCTTTGCCTGTTCGCTCGACCAAGTTGGGGCCGCCGAGCTTCGACAACCTGTTGAGCAGTCTGGTGGATTCATGATTCTCTCCGAATCTTTCGAATCCGATCAGTTCAAGAAATGTCTTGGGCATATGTTCAAGTCTGACAATCAGGGCCATTTGAATATGAACTTTGATGCCACTATTGAGATAGTTACCACCAAAGATGTCCAAATCTGTGGAGCACTTGGTCCTTGCGTGTCTCTGCATAGAAAGAACAGTTTGGTGAGTGACGCTGAGGTTGGACAAGGTGGCACCTCTTTGTGGAAGTTAAACACTCTTACCCACAAAACTTGCATTGCTTTTTTCTTCCAAGTGAATCAGCGGCAAAGAATTCAACCCGGCTCCGCATTTTTGATTCAGTTTATCACGCGGTACAGGCAGGGGAACATGGGATGCCGGAAAAGAGTGACAACTGCTGCTAGACGATGGGTTGCAAACCATTCTGCTGATATTGCTGCTGGATTTGATCAAGAAGCCGCCGCTACAGTTATGGCAAGACTTGCCATTCTACGTGCACAGGAATGCCATCCCCGTGATGTTATTAGATGGCTGGATGACACGCTCATACGTTTTACTTCTAAGTTTGGGGACTATGTGCCGGAAGACCCATCTTCCTTCCGCCTATCCTCCAACTTTTCGCTCTATCCCCAGTTTATGTTTCACTTGAGGCGATCTCAATTCATTGATGTCTGTAACACTACTCCTGACGAGACTGCTTTTTTCCGGCTCATGCTGAACCGCGAGGGAGTTGTAGGATCGCTTATAATGATTCAACCTACGCTTTTCCAATATTCGTTTGATGGTCCACCTGTTCCAGTACTGCTGGATATTCGTTCTGTTTCTCCGGATTTTATCTTGCTCTTTGATTCTTTCTTCTATGTGGTGATTCATCACGGGTCCAAGATCGCTCAGTGGAGGAAGCTGGGTTATGATAAGGACCCCAATCATGAGAACTTCAGAAAGCTGTTGGAAGCCCCGGAACTGGATGCAGAGCAATTGGTGGCCGACAGGGTTCCAGTGCCAAGGATTATAAGATGTGACCAGCATAGTAGCCAGGCTAGATTTCTTCTCGCCAAGTTGAATCCATCTGTTACTCAAAATTCAACCTACACAGATGGATCAGATATTATATTTACTGATGAAATGAGCTTGGAAGTTTTTCTAGATCAGTTGCAGGTGCTGGCAGTGCAAGGCTAG 2220 0.5113 MDLLELEAVEGLRWTWNSWAAEGTNLVIPLSIMCSPLMVSEVPILPYHPLLCSRCAAVLNPYARLDYQSRIWHCPFCFLRNPFPRPIADTNLPAELFPTYSTVEYSPSPPSSSPPPPPPAFVFLVDLSSPDDQLLSLKKDLLLLLHHHFPDHALVALLTFDSMVYLHHLASSPCSSLHLFHGSRHLSSNQIRQFLNIGRPHPLHHGHTPKQDFLLPFSECEFSITSAIEDIHSTFDSTSATRPPRCTGTAISVALGLLESCLVTTGSRIMLFTSGPATIGPGIVVDSDLRQPIRTHHHIFNNQARHHANSCSFYNQLSKRLSDASVILDLFACSLDQVGAAELRQPVEQSGGFMILSESFESDQFKKCLGHMFKSDNQGHLNMNFDATIEIVTTKDVQICGALGPCVSLHRKNSLVSDAEVGQGGTSLWKLNTLTHKTCIAFFFQVNQRQRIQPGSAFLIQFITRYRQGNMGCRKRVTTAARRWVANHSADIAAGFDQEAAATVMARLAILRAQECHPRDVIRWLDDTLIRFTSKFGDYVPEDPSSFRLSSNFSLYPQFMFHLRRSQFIDVCNTTPDETAFFRLMLNREGVVGSLIMIQPTLFQYSFDGPPVPVLLDIRSVSPDFILLFDSFFYVVIHHGSKIAQWRKLGYDKDPNHENFRKLLEAPELDAEQLVADRVPVPRIIRCDQHSSQARFLLAKLNPSVTQNSTYTDGSDIIFTDEMSLEVFLDQLQVLAVQG 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01431 739 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 600 738 IPR036180 -
Vimu6g01431 739 Gene3D - 6 482 - -
Vimu6g01431 739 Pfam Sec23/Sec24 helical domain 497 593 IPR006900 GO:0006886|GO:0006888|GO:0030127
Vimu6g01431 739 SUPERFAMILY beta-sandwich domain of Sec23/24 2 496 - -
Vimu6g01431 739 Gene3D von Willebrand factor, type A domain 118 383 IPR036465 -
Vimu6g01431 739 CDD Sec23_C 589 709 IPR037550 GO:0030127|GO:0090114
Vimu6g01431 739 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 5 738 IPR037364 -
Vimu6g01431 739 Gene3D Severin 599 703 IPR029006 -
Vimu6g01431 739 FunFam Protein transport protein SEC23 599 703 - -
Vimu6g01431 739 FunFam Protein transport protein SEC23 382 482 - -
Vimu6g01431 739 FunFam Protein transport protein SEC23 118 383 - -
Vimu6g01431 739 Pfam Gelsolin repeat 611 697 IPR007123 -
Vimu6g01431 739 Pfam Sec23/Sec24 zinc finger 49 85 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Vimu6g01431 739 Pfam Sec23/Sec24 trunk domain 116 367 IPR006896 GO:0006886|GO:0006888|GO:0030127
Vimu6g01431 739 Gene3D Sec23/Sec24 helical domain 494 736 - -
Vimu6g01431 739 SUPERFAMILY Zn-finger domain of Sec23/24 42 111 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Vimu6g01431 739 Pfam Sec23/Sec24 beta-sandwich domain 385 485 IPR012990 -
Vimu6g01431 739 SUPERFAMILY Helical domain of Sec23/24 497 599 IPR036175 GO:0006886|GO:0006888|GO:0030127
Vimu6g01431 739 SUPERFAMILY vWA-like 118 374 IPR036465 -
Vimu6g01431 739 FunFam Protein transport protein SEC23 46 102 - -
Vimu6g01431 739 Gene3D - 46 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01431 Vimu-Chr6 13842571 13844916 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01431 K14006 - gmx:100784000 1198.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01431 6 13842571 13844916 Vimu6g01431 6 13842571 13844916 ECH