Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01428 ATGAGTGCAGAGATTGATTCAACTTCTGCTCCTGAACTTCATAAAATGTCTGGAACTTCATCAGTAACAACCCCTAGTGGCCAAAAGCTCTCTATATTTGCAGCCAAATCAGGATTTGTCATCCCTAAAAACAAATTGTCCGGGTCACTGGTCCCTATTTTCCGAGGGGCTAAAAAACACGGGGTCACTGGAGTCATCAATGAAGAAAGTTCAAAACAAACTGAGAGGAAATCAAAATGGGGACATGATCTTACACAGGATGCGACTGTCAGGAGGGGAAAGGCTCTAGCTTTGCAGATTCGAGTGGATCAAATCACAAAGCAGTTGGAATCAGAAAAACTGGAAGTTGGGGACACTCAGAACTTGCCATTGGGAGCTGAGAACACGGATAAAAGCAAATCTGGCTCTCAAATGAACAGCAACAAGTCAGAAATGCTCGAACTTGAAAAGCGTGGAGCCATAGGTGAAATACTAAAATTAGATCCCAGTTACAAACCTCCACGTGGTTTTAAACCATTGTTAAAAGAAGCCAGCATTCCTTTGCCTGTTCAAGAATATCCTGGGTACAATTTTGTTGGTCTAATATATGGACCTGAAGGTGATAATCAGAAACAACTAGAAAAGGAAACTGGTGCCAAGATAAAAATTCATGGAACCAAAGCAGACACAGGAGAGAAAGGTGAAATTAAGCCTGGAACTGATATCCATTCCAGTTACAAGGAGATGTGTGTTAACATATCAGCTGATAGTTTTGAAAAAGTGGATGCAGCAATGTCAATAATTGAACTGCTGATTACCTCTGTAACTGGGAATTTAGACGCTGGCTCTACACCCTCTATATCAGTTTCTAGGGAAAACACTGATATTCTGTGTCAAAGCCGAGAAGGCCAGCCTTCTCATGCAGATTCTGTTTCTCTGGAAAACAAGGCTGTTCTGCAACCAGCAGCTGTTACCCAAAAGTATGAAGATAACTTCCAATACTCTACACCATGGTTTTCAGTGGTTCCTTCTAATACCCCCATTTTTGCTTCATCTGGCACTGTACCCCCCCCAAACCCATTAGGCCTTGCTAGAACTCCCCATTTTCCGTCACAAACTTCACATTCGGTTCCTACTTTTGGTGCTCAACCTGGATTTCAACCAATTATTCCAAATCAACATGTTTCCGTGCAAGCACCACCACCAAGACAGATTTTACACTATCCTCATTTGACTCAAGCGAGTCCTTTGGGTCACGTTGGGCCCCCAAGAAATGCTTCTATAATATCTGTACGGAATTTGTCAACTCCAACAAATGCTTCACATTCATTTCCTGTTGCTTTAAGCCAATCAACGCCCATAGGACAAGTGCAGACATCAGTTTCTTCATTTCCTCTACCCATATCTGATGTATCACCACTGCCCATACCTAGCCAGCCCATCACCCATCTTGGGGCCCCTTCTGGACAGAATGAAGCCCCTGTCGCTGTTAAAACATCTATTGGTCCCAGCAATATGGGGTCAATGGCTCCACCTGGAAGACCTGCCTCTCTACATCAACAACCGGAAGTTGCATTTATGCCACCACAGTCAAATATGTCAATGATACCACGATCTGCTTCCTTTCCTCCACATCAAGTAGGAATATCCCCCGGACCACTATCATCTTTGAGACCTATGTCTGTACCAATACCTGCACCTAAACATTCATCTGTAAACCATTTATCAGGACCTGTTTCATTTCCTTCGTCAGGAATATCCCCCTCTTTTCCATTGCCTCAGCAAGCGGGAATACCCAATTCTGCTTCTGGAATTGCTCCTTTTCACACCCATGTAAAACCATCTGTCTTGGCGCCATCAAAATCTGGAAATTTTACTTTTCGATCACATCCCCCCAATGCAGACTACATTCAAGTGGTTTCTGGACCAAACAGTCAAGCAGGTGCTACGCAGGAGCCACCTTCTGGTCCCCGGCCTCCGCCATTTGGGTTTGGCGTGCCTGATCAGCCTCTTCAAAACTTTCCTAGGACACAATTCCCTGCTCAAATGGATCAAACCATTTCCTTCGGGGGAAGATCAGGTTCCATGTCGAACTCAATTCCTCCACCAAGGCATACTGCATTTCCATATGGTGGTCAACCTGCATCTAGATCTCCAGTCCCACAAATGGGTATGAATAACTTCATTCCTGCTCCACAAAGGCCAAACTTGACCGGTGCTGTTGCCCAAAGAGGCATGCCTATCCGACAAAGCTACGCCGTTCAGATGGCACGGCCAGATATCCAAATGCCCCTGAATCACAAGTTTGTCAACAATACGCTCATGGCTTCTGGTAAGCTACCATATTCTGCGGACCAAATTTATGACCCCTTTTCACCCACTTCTGCACCTCCACAACAAAAAGGTAATCCTGGACAATGA 2400 0.4467 MSAEIDSTSAPELHKMSGTSSVTTPSGQKLSIFAAKSGFVIPKNKLSGSLVPIFRGAKKHGVTGVINEESSKQTERKSKWGHDLTQDATVRRGKALALQIRVDQITKQLESEKLEVGDTQNLPLGAENTDKSKSGSQMNSNKSEMLELEKRGAIGEILKLDPSYKPPRGFKPLLKEASIPLPVQEYPGYNFVGLIYGPEGDNQKQLEKETGAKIKIHGTKADTGEKGEIKPGTDIHSSYKEMCVNISADSFEKVDAAMSIIELLITSVTGNLDAGSTPSISVSRENTDILCQSREGQPSHADSVSLENKAVLQPAAVTQKYEDNFQYSTPWFSVVPSNTPIFASSGTVPPPNPLGLARTPHFPSQTSHSVPTFGAQPGFQPIIPNQHVSVQAPPPRQILHYPHLTQASPLGHVGPPRNASIISVRNLSTPTNASHSFPVALSQSTPIGQVQTSVSSFPLPISDVSPLPIPSQPITHLGAPSGQNEAPVAVKTSIGPSNMGSMAPPGRPASLHQQPEVAFMPPQSNMSMIPRSASFPPHQVGISPGPLSSLRPMSVPIPAPKHSSVNHLSGPVSFPSSGISPSFPLPQQAGIPNSASGIAPFHTHVKPSVLAPSKSGNFTFRSHPPNADYIQVVSGPNSQAGATQEPPSGPRPPPFGFGVPDQPLQNFPRTQFPAQMDQTISFGGRSGSMSNSIPPPRHTAFPYGGQPASRSPVPQMGMNNFIPAPQRPNLTGAVAQRGMPIRQSYAVQMARPDIQMPLNHKFVNNTLMASGKLPYSADQIYDPFSPTSAPPQQKGNPGQ 799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01428 799 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 178 269 IPR036612 GO:0003723
Vimu6g01428 799 ProSiteProfiles Type-1 KH domain profile. 190 261 - -
Vimu6g01428 799 MobiDBLite consensus disorder prediction 633 660 - -
Vimu6g01428 799 MobiDBLite consensus disorder prediction 1 27 - -
Vimu6g01428 799 MobiDBLite consensus disorder prediction 781 799 - -
Vimu6g01428 799 MobiDBLite consensus disorder prediction 778 799 - -
Vimu6g01428 799 Pfam KH domain 190 262 IPR004088 GO:0003723
Vimu6g01428 799 PANTHER RNA-BINDING PROTEIN RELATED 31 637 IPR045071 -
Vimu6g01428 799 MobiDBLite consensus disorder prediction 118 142 - -
Vimu6g01428 799 FunFam Splicing factor-like protein 1 isoform A 175 278 - -
Vimu6g01428 799 MobiDBLite consensus disorder prediction 122 142 - -
Vimu6g01428 799 Gene3D K Homology domain, type 1 170 293 IPR036612 GO:0003723
Vimu6g01428 799 SMART kh_6 173 266 IPR004087 GO:0003676
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01428 K13095 - gmx:100777227 1207.59