Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01427 ATGAGATCAGATCAGATTCCCTTGAAGAACAAAGTCTTAATTGGAATGGTGAGGGATGCAGCATTCTCCTCCTTCATCTTGCTTTTACTGTTGGTTGGGTTTGGTAACTCAGATTTAGGCAAAGACAGAGAAGAGTGTGCAGACAAACTTATAGGGCTGGCTAGCTGTGTTCCTTACGTTGGTGGTGAGGCCAAAACCCCAACCATAGACTGCTGCAGTGGTCTCAAAGCTGTCCTCGACAAGAGCAAGAAGTGCATCTGCATCCTCATCAAAGATCGTGATGACCCCAATCTTGGCATCAAAATCAATGCCACTCTCGCCATTCAACTACCCTCTGCTTGCAACGCACCTGCTAATATATCTCACTGTGTAGGTACCTACTCATATCATTTCACTCTTTTTTCTCAATATTTTCATTTTCATTCCATTTCATATATAATATCATACTTTTCAGATCTTTTGCATTTAGCACCTAACTCTCCTGATGCCAAGGTGTTTGAGGGATTGCAAAAATCCGCCAAATCAAACAGTTCCACCCCAGTTTCCACTGGTGATTATTATTACATTACTCTTAATACGTGTTTGTGA 588 0.4167 MRSDQIPLKNKVLIGMVRDAAFSSFILLLLLVGFGNSDLGKDREECADKLIGLASCVPYVGGEAKTPTIDCCSGLKAVLDKSKKCICILIKDRDDPNLGIKINATLAIQLPSACNAPANISHCVGTYSYHFTLFSQYFHFHSISYIISYFSDLLHLAPNSPDAKVFEGLQKSAKSNSSTPVSTGDYYYITLNTCL 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01427 195 FunFam Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 43 123 - -
Vimu6g01427 195 Pfam Probable lipid transfer 41 123 IPR016140 -
Vimu6g01427 195 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 45 125 IPR036312 -
Vimu6g01427 195 Gene3D - 43 122 IPR036312 -
Vimu6g01427 195 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN-RELATED 33 171 IPR043325 -
Vimu6g01427 195 SMART aai_6 46 123 IPR016140 -
Vimu6g01427 195 CDD AAI_LTSS 53 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01427 Vimu-Chr6 13785194 13785781 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01427 22 182 Acyl Lipid Metabolism Gene Families AT1G55260 46.012 1.31e-44 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01427 - - pvu:PHAVU_001G268300g 257.299