Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01424 ATGGTGATGAGTTTATCATTTTCTTCGGTGACAGTAAAGCCTTGTTCCATGAGTGTGAGCAATAAGAAAACATGTCGTAGCAGAAGAAGATTTAGTGTTACAAGATCAGAAATAACCGTGGCTCCCAATCCCCAACAGAAAAGGCAATTATCAAAGCGAGGATTTCCTCTAACGGATTTACACGTACAAGAGGTTGTTCACAGGCAGACTCAAATTATTAGTCCTTGTAGCAAGCCTAATATACAGTTTCATTCGACTTTTCTGAATGACGCCTATGAAATGTGCAGAAATATCTGCGCCGAATACGCCAAGACCTTCTATCTAGGTATTCTAGATTCTTTTCTTACTTGCAGATTGTTTCAATTAGCATGTTTCTTGTGTGATTTACCTGGCTTGACTATAAACAGGAACCTTGCTTATGACGGAGGAAAGACAGAAAGCTATATGGGCAATTTATGGAGGACGGATGAGCTGGTTGATGGTCCTAACGCTGCGCATATGAGCTCTGCTGTTCTTGATAGGTGGGAAGATAGATTGCACGACATTTTCAACGGACATCCCTACGATATGCTTGATGCTGCTCTTACTGATACCCTCTCCAAGTTTCCCTTGGATATCAAGCCTTTCAGAGACATGATACAAGGAATGAGAATGGATACGAGGAAAGCTCGCTACAACAATTTCCAGGAGCTATATCTTTATTGTTACTATGTGGCAGGAACTGTTGGCTTAATGACTGTTCCAATAATGGGTATCGCACAGGAGTCGGTTGTCCCTGTACAAAGTATATATGATGCTGCACTATATCTGGGTATAGGAAATCAACTCACCAACATTCTTAGAGATGTCGGAGAGGAAGGTAGAGTGTATCTTCCCCAAGACGAACTAGTCGAGTTTGGATTATGTGACAAGGATGTGTTTTCAAGAAATGTGAGTGAAAGATGGAGAAAGTTTATGAAACATCAAATTACGAGGGCAAGATTCTACTTCAACCGGGCAGAAGAAGGAGTTTCTCAGCTTGAAAAGGCCAGCCGTTGGCCGGTTTGGTCCTCATTAATATTGTATCGTAAGATCCTAGATGCAATTGAAGACAACGACTACGACAATTTGACTAAACGAGCTCATGTGGGACGAGCTAAGAAATTTTTTACGTTGCCTGAAGCTTACACTAGATCTCTTTCAAATTACAAAACGAAATTTCCACGTTTTACCAAAATTTTGATGCCTGGAGCTACTTTAGAATGTCTGAAGCAAAGGGCAATGACATGCCAAATTGTCAATGGGTATTGTGACCCCAATTTAGGTACATCTGCAATAGCCCATTTTGAAGGACGACAGAGGAGACAATTTTGGGATTTAGAAGGATGTTTGAGAGGAAGAGAGAGCAAGTGTTGTGGGTGTTTAGGTTTGGAAGAGGACGAAGGAGGTGCCTTAATGACGCAGAAAACGGTGATAGATGGTGATGGTGTACATGGTAATCGCTGCTACAACTACAAAACTTGA 1503 0.4138 MVMSLSFSSVTVKPCSMSVSNKKTCRSRRRFSVTRSEITVAPNPQQKRQLSKRGFPLTDLHVQEVVHRQTQIISPCSKPNIQFHSTFLNDAYEMCRNICAEYAKTFYLGILDSFLTCRLFQLACFLCDLPGLTINRNLAYDGGKTESYMGNLWRTDELVDGPNAAHMSSAVLDRWEDRLHDIFNGHPYDMLDAALTDTLSKFPLDIKPFRDMIQGMRMDTRKARYNNFQELYLYCYYVAGTVGLMTVPIMGIAQESVVPVQSIYDAALYLGIGNQLTNILRDVGEEGRVYLPQDELVEFGLCDKDVFSRNVSERWRKFMKHQITRARFYFNRAEEGVSQLEKASRWPVWSSLILYRKILDAIEDNDYDNLTKRAHVGRAKKFFTLPEAYTRSLSNYKTKFPRFTKILMPGATLECLKQRAMTCQIVNGYCDPNLGTSAIAHFEGRQRRQFWDLEGCLRGRESKCCGCLGLEEDEGGALMTQKTVIDGDGVHGNRCYNYKT 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01424 500 FunFam Phytoene synthase chloroplastic 148 387 - -
Vimu6g01424 500 SUPERFAMILY Terpenoid synthases 154 395 IPR008949 -
Vimu6g01424 500 Gene3D Farnesyl Diphosphate Synthase 82 385 IPR008949 -
Vimu6g01424 500 Pfam Squalene/phytoene synthase 155 378 IPR002060 GO:0009058
Vimu6g01424 500 PANTHER BIFUNCTIONAL LYCOPENE CYCLASE/PHYTOENE SYNTHASE 23 111 - -
Vimu6g01424 500 CDD Trans_IPPS_HH 93 381 IPR033904 GO:0004311
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01424 Vimu-Chr6 13767464 13770263 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01424 K02291 - gmx:100782394 580.482