Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vimu6g01421 | ATGGTATATCAGCATGTCGGACACTATTCAGCACTGGCACTCCTTCGACCTGCCTTGAGCATGTCTGCTCTACCTCATCGTGTTCGTGGTGGTTGCTGTTGTCCTTCACTATGGTTGTTGTTGCCAAATGTGCCTTGGGCATCTGTTGTTGGTGATGCTCCTCCACCATCGTGCAGGTGCACAATTGAAGAGAAGTATGAATACCACTTGGTTGGTTTAGTGGAGCATTCGGGAACAATGAGAGGGGGTCACTATGTTGCCTATGTGAGAGGAGGGCACAGGAACAGTGGGAAAGAGAGTGAGGGTTCCACATGGTATCAGGCAAGTGATGCATATGTGCGTGAAGTTTCCCTTGATGAAGTTCTTCGCTGTGAGGCATACATTTTATTCTACGAAAAGTTTGAGTGA | 408 | 0.4779 | MVYQHVGHYSALALLRPALSMSALPHRVRGGCCCPSLWLLLPNVPWASVVGDAPPPSCRCTIEEKYEYHLVGLVEHSGTMRGGHYVAYVRGGHRNSGKESEGSTWYQASDAYVREVSLDEVLRCEAYILFYEKFE | 135 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vimu6g01421 | 135 | PANTHER | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE | 60 | 133 | - | - | |
| Vimu6g01421 | 135 | Pfam | Ubiquitin carboxyl-terminal hydrolase | 63 | 131 | IPR001394 | GO:0004843|GO:0016579 | |
| Vimu6g01421 | 135 | Gene3D | Cysteine proteinases | 39 | 135 | - | - | |
| Vimu6g01421 | 135 | ProSiteProfiles | Ubiquitin specific protease (USP) domain profile. | 1 | 134 | IPR028889 | - | |
| Vimu6g01421 | 135 | ProSitePatterns | Ubiquitin specific protease (USP) domain signature 2. | 68 | 85 | IPR018200 | GO:0004843|GO:0006511 | |
| Vimu6g01421 | 135 | SUPERFAMILY | Cysteine proteinases | 62 | 134 | IPR038765 | - |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vimu6g01421 | K11844 | - | gmx:100776156 | 145.591 |