Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00919 ATGAAGTTTGGGAAAGAATTTGTCTCACAAATGGTGGCAGAATGGGAAGAAGCATACATGGATTACAATTCCCTGAAAGCCACTCTGAAACATATATCAAAGTTTAGGGAGTTAAACGAGTCAGCAGCAATGGCATCAACCCCAAAAGGATCACTGAAGAGAAGGTTAACCCTCTATAGAGCCTTTAGTGGTCTAACTAGTGGACAAAGAGGGTCTCCTAGGAAGAATGAGGATGAAGTTATACTTGTTCGTGCTGAGGAGGGTGAAGGTTCAGAAGGGTTGTACCAGACCATGTTCCTCAAGCCTTCTGAAGAAGGGGCAGAGCAAGATCTTGTTTTTTTCAAGAAACTTGATCATGAGTTTAACAAGGTCAATAACTTCTACAAGAAAATGGTGAATGCGATGATTGAGGAGGCAGAGGAGTTAAGTAAGCAGATGAATGCTTTGATTGCTTTGAGAATAAAGGTTGATAAGGTGGGGTTCAGAAATGTTGCTAGCAGTGGGAGCTCAACTTCAATTCCCATGAACGATCATATATATAATGCCAGACCTGGTCACTCACGTGTGCACATGGATGTGATTCATGAAATTGAATTGAGCAATGAAAGGCATTTGGAAAATGGAACTGGAAACTACGAGAAACAAACCACTTCTGATGAAGGTTTTAGACCAGCTTCAGTGGAGATCCTTGATCGTGTTAAGATCAACATGACCGCACTAGATTCTCCAATATCAACCATAAAAGGGCTTCTCTCGAGTTCAAAACCTGACCAATCATTTAGCAGGAAAGAGCTCACGAAAGCGGAGGAACAAATCAGCATAGCCTTAAAGGAATTCTATCATAAGCTTCGACTTCTTAAAAGCTATAGTTTCTTAAACTTATTGGCATTCTCAAAAATCATGAAGAAATATGACAAGGTCAGTTCAAGGAATGCATCAAAGGACTACTTAAAGATGGTGGACACTTCATATGTTGGCAGCTCAGATGAGGTTAATAGGCTCATGGAAAGGGTTGAACATGCCTTTGTTAAGCACTTCGCAAATGGGAATCACAGGAAAGGAATGAACACATTGAGACCAACTACTAAGAAGGAGCGCCATAGAATCACATTCTTATTGGGGTTATTTACTGGCTGCTCAATTGCTCTCATTGTGGCTCTTATTGTACTCATACATGCAAGAAATATTCTATATAGCGAGGGACGTACTAAATATATGGACAACATATTTCCTCTTTATAGTCTCTTTGGATACCTAGTCTTGCATATGATCATGTACTCTGCAAATGTATACTTCTGGAGACGTTATAAAATCAACTACTCCTTTATATTTGGCTTCAAGGAAGGAACAGAATTGGGATATAGAGAAGTCTTTCTTCTTAGCTCTGGCCTTGCAGTACTCTCATTGGCTGCAGTCCTCTCAAACTTGGATATGGAAATGGATCAGAGAACAAAAAGTTTCTCAGCATTTACAGAATTAGTCCCTTTAGGCCTCGTCATTGTTCTGCTTCTCATTACATTTTGTCCCTTCAACATCATATATAAATCCAGTCGCTTCTTCCTTATTCGGTGTGCATTTCATTGCATTTGTGCTCCCCTTTACAAGGTCAATCTCCCAGAAAATTTCTTGGCAGACCAGCTTACCAGCCAGGTGCAAGCCTATAGAAGTTTGGAATTCTATGTCTGCTACTATTTATGGGGAAACTTCAAGACCAGGTCAAACAAGTGTCTTCAAAGTGATGTCTATAAGGCATTTTACTTAATTGTAGCTATTATTCCATTCTGGATCCGCTGTCTCCAGTGCTTTCGACGCTTACTTGAAGAAAGAAATACAATGCACGGTCTCAATGGGCTAAAGTACATCTCCACAATAGTAGCACTTGTGATGAGAACTACTAATGAGTTCCATAGAGGAATTGTTTGGCAAATTCTAGCTGCAACTTCTTCAAGCATTGCAACGATTGTTAATACATATTGGGATGTTGTCATAGACTGGGGTTTGCTTAGAAGAAATTCAAAAAATCCATGGTTGAGAGAAAAACTCTCTGTACCAAACAAAAGTGTATATTTTGCTGCTATGGTGTTGAATGTTGTGTTGCGACTTGCATGGATGCAATCTGTTTTAGGCATTAGAGAAGCTCCTTTCCTGCATAGAACAGCTTTGACTGCTCTTGTAGCATGCTTGGAGATCCTTCGCCGTGGTATTTGGAACTTTTTCAGGTTGGAGAATGAACACTTGAACAATGTTGGCAACTACCGAGCATTCAAATCAGTACCCCTGCCTTTTAACTATGAAGATGAAGAAGAAATTACTGTCACATAA 2322 0.3988 MKFGKEFVSQMVAEWEEAYMDYNSLKATLKHISKFRELNESAAMASTPKGSLKRRLTLYRAFSGLTSGQRGSPRKNEDEVILVRAEEGEGSEGLYQTMFLKPSEEGAEQDLVFFKKLDHEFNKVNNFYKKMVNAMIEEAEELSKQMNALIALRIKVDKVGFRNVASSGSSTSIPMNDHIYNARPGHSRVHMDVIHEIELSNERHLENGTGNYEKQTTSDEGFRPASVEILDRVKINMTALDSPISTIKGLLSSSKPDQSFSRKELTKAEEQISIALKEFYHKLRLLKSYSFLNLLAFSKIMKKYDKVSSRNASKDYLKMVDTSYVGSSDEVNRLMERVEHAFVKHFANGNHRKGMNTLRPTTKKERHRITFLLGLFTGCSIALIVALIVLIHARNILYSEGRTKYMDNIFPLYSLFGYLVLHMIMYSANVYFWRRYKINYSFIFGFKEGTELGYREVFLLSSGLAVLSLAAVLSNLDMEMDQRTKSFSAFTELVPLGLVIVLLLITFCPFNIIYKSSRFFLIRCAFHCICAPLYKVNLPENFLADQLTSQVQAYRSLEFYVCYYLWGNFKTRSNKCLQSDVYKAFYLIVAIIPFWIRCLQCFRRLLEERNTMHGLNGLKYISTIVALVMRTTNEFHRGIVWQILAATSSSIATIVNTYWDVVIDWGLLRRNSKNPWLREKLSVPNKSVYFAAMVLNVVLRLAWMQSVLGIREAPFLHRTALTALVACLEILRRGIWNFFRLENEHLNNVGNYRAFKSVPLPFNYEDEEEITVT 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00919 773 Pfam SPX domain 1 320 IPR004331 -
Vimu6g00919 773 ProSiteProfiles SPX domain profile. 1 318 IPR004331 -
Vimu6g00919 773 CDD SPX_PHO1_like 2 314 IPR034092 -
Vimu6g00919 773 PANTHER XENOTROPIC AND POLYTROPIC RETROVIRUS RECEPTOR 1-RELATED 1 766 - -
Vimu6g00919 773 Pfam EXS family 410 746 IPR004342 GO:0016020
Vimu6g00919 773 Coils Coil 125 152 - -
Vimu6g00919 773 ProSiteProfiles EXS domain profile. 577 772 IPR004342 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00919 Vimu-Chr6 10169819 10174329 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00919 - - gmx:100795104 1353.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g00919 6 10169819 10174329 Vimu6g00919 6 10169819 10174329 ECH