Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00828 ATGGCCAAGGGTCCCGGTCTCTACTCTGATATCGGCAAGAAGGCCAGGGATCTGTTGTTCAAGGACTACCAGAGTGACCAGAAGTTCACCGTCACCACCTACTCGCCCACCGGAGTTGCTATTACGTCATCAGGAACTAGGAAAGGTGAACTTTTTGTGGCTGATGTCAACACACAGTTGAAGAACAAAAACATCACTACTGATATCAAAGTTGATACAGATTCTAATCTCTTTACAACTATCACTGTCAATGAACCTGCTCCTGGTCTTAAGGCTATCTTTAACTTCAAAGTTCCTGACCAGAGGTCTGGAAAGGTGGAACTTCAGTACTTGCATGACTATGCTGGAATAAGCACCAGTGTTGGGTTGACAGCGAACCCAATTGTTAACTTCTCTGGTGTTGTAGGAACCAATGTTCTTGCTCTTGGTGCTGATCTTTCATTTGACACCAAAATTGGGGAGTTAACAAAATCCAATGCTGGAGTGAGCTTCACTAAGGATGACTTGATTGCTTCATTGACTCTGAATGACAAAGGTGATGCTCTGAATGCTGCATATTATCATGTAGTTAACCCCTTGACCAACACTGCTGTTGGTGCTGAGGTCACTCATCGTTTCTCAACTAATGAGAACACTCTCACTCTTGGTACCCAACATGCATTGGATCCATTGACCACATTGAAGGCACGTGTCAACAACTTTGGTAAGACAAGTGCTCTCATCCAGCACGAGTGGCGTCCCAAATCATTCTTTACAATTTCTGGTGAGGTAGACACCAAGGCCATTGAAAAGAGTGCCAAGGTTGGATTGAGTTTGGTTCTCAAGCCCTAA 831 0.444 MAKGPGLYSDIGKKARDLLFKDYQSDQKFTVTTYSPTGVAITSSGTRKGELFVADVNTQLKNKNITTDIKVDTDSNLFTTITVNEPAPGLKAIFNFKVPDQRSGKVELQYLHDYAGISTSVGLTANPIVNFSGVVGTNVLALGADLSFDTKIGELTKSNAGVSFTKDDLIASLTLNDKGDALNAAYYHVVNPLTNTAVGAEVTHRFSTNENTLTLGTQHALDPLTTLKARVNNFGKTSALIQHEWRPKSFFTISGEVDTKAIEKSAKVGLSLVLKP 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00828 276 PANTHER VOLTAGE-DEPENDENT ANION-SELECTIVE CHANNEL 1 276 IPR001925 GO:0005741|GO:0008308|GO:0098656
Vimu6g00828 276 FunFam Outer mitochondrial membrane protein porin 1 275 - -
Vimu6g00828 276 Pfam Eukaryotic porin 4 269 IPR027246 GO:0005741|GO:0055085
Vimu6g00828 276 CDD Porin3_VDAC 5 275 IPR001925 GO:0005741|GO:0008308|GO:0098656
Vimu6g00828 276 ProSitePatterns Eukaryotic mitochondrial porin signature. 219 241 IPR001925 GO:0005741|GO:0008308|GO:0098656
Vimu6g00828 276 Gene3D Porin 1 275 IPR023614 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00828 Vimu-Chr6 9202591 9207061 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00828 K15040 - gmx:100777928 527.709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g00828 6 9202591 9207061 Vimu6g00828 6 9202591 9207061 ECH
Vimu6g00828 6 9202591 9207061 Vimu7g00761 7 7602211 7604144 ECH