Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00669 ATGGAGGTTGTTTCTCAGCCTCTGTGCACCATTCTATTCGCCACGCGCAAACACTCTCTTCTCATTTCAAAAGAAATCCCCAATCCTTCTAAGCACTTCCCCTTCTTATCTTTTCGCTCCACCGCTCTCTCCTCTTCTTCGCGTGTTTCTCCACCGTCTCTTCCGTTCGCGGCGCCGGAGAACCAGTTGAGTGTTGGTGAAGGAGAGAACACCGATGCAAGTGAATGGGCCCTGCAAGATTTTTACTCCCTTAGGAGGGATGTTGAAATTATGTTGCAACGTGTTGAAGAGATTAGAGAGTCTTCTGGTCTAAAACTATTGGAGCAAGAACTTGCCAATTTGGAGGAGCAAGCAGCAGATAGCTCTTTCTGGGACGATCGGGCCAAAGCTCAAAAGATTCTTTCGACCTTGGCTGATGTCAAAGAGAAGATAAAATTACTCAATGATTTTAAAACCCAGGTTGAGGATGCAGAAACAATAGTTATGCTGACTGAGGAAATGGAATCCATAGATAGAGGACTTTTTGGTGAGGCCACCAATCTTATTAAAGAACTGAATAAATCACTAGATCGATATGAGCTGACTCAACTTCTCTCTGGTCCTTATGATAAAGAAGGTGCTGTTATCTCTATTACAGCAGGTGCTGGTGGTACTGATGCCCAGGTAAATAGCTATCTTTATTCAGATGCTATAGTAATGAACTTGTTTCTGACATTCCTAGTTCAAGCTTTAACTTCTGTACAAAAATTATCACCTCCAGAACAGGATTGGGCAGACATGCTTCTTAGGATGTACATGAGATGGAGTGAGAAACAAAGATACAAGACCAGAGTGATTGAGAAATCCCCCGGAGAAGAAGCTGGAATTAAATCTGCCACTGTTGAAGTTGAAGGTCGTTATGCATATGGGTATTTGTCTGGGGAGAAAGGAACGCATCGCATTGTTCGCCAATCACCTTTTAATGCCAAAGGGCTTCGTCAGACAAGCTTTTCTGGTATTGAGGTTATGCCTCTTCTTCCAGATGAATCTATGGATGTTGAAATTCCCGAGGAGGACCTGGATATTAGTTTTTCAAGAGCAGGTGGAAAGGGAGGTCAGAATGTCAACAAGGTTGAAACTGCAGTTCGGATTACACACATTCCAACTGGTGTCACTGTTCGCTGCACAGAGGAGAGATCACAACTGGCGAATAAGATCAAAGCTTTAAGCCGTTTGAAAGCCAAGTTGTTGGTTATAGCTGAAGAGCAGCGTGCATCAGAGATTAAGCAGATTCGAGGGGACGCAGTCAAGGCTGAATGGGGACAACAAATACGGAACTATGTATTCCATCCATACAAACTAGTCAAAGATGTAAGAACAGGGCATGAAACGACAGATGTCATCTCTGTAATGGATGGCGAGTTGGACCCTTTCATCAAATCTTACCTCAAATACAAGTTCAATATGTCACTGTCTACAAATGGGGTTAACTAA 1473 0.4325 MEVVSQPLCTILFATRKHSLLISKEIPNPSKHFPFLSFRSTALSSSSRVSPPSLPFAAPENQLSVGEGENTDASEWALQDFYSLRRDVEIMLQRVEEIRESSGLKLLEQELANLEEQAADSSFWDDRAKAQKILSTLADVKEKIKLLNDFKTQVEDAETIVMLTEEMESIDRGLFGEATNLIKELNKSLDRYELTQLLSGPYDKEGAVISITAGAGGTDAQVNSYLYSDAIVMNLFLTFLVQALTSVQKLSPPEQDWADMLLRMYMRWSEKQRYKTRVIEKSPGEEAGIKSATVEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFSGIEVMPLLPDESMDVEIPEEDLDISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGHETTDVISVMDGELDPFIKSYLKYKFNMSLSTNGVN 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00669 490 SUPERFAMILY Release factor 107 222 IPR045853 -
Vimu6g00669 490 Coils Coil 97 117 - -
Vimu6g00669 490 Pfam RF-1 domain 343 452 IPR000352 GO:0003747|GO:0006415
Vimu6g00669 490 Pfam PCRF domain 107 221 IPR005139 GO:0006415
Vimu6g00669 490 Pfam PCRF domain 255 332 IPR005139 GO:0006415
Vimu6g00669 490 Gene3D - 339 435 - -
Vimu6g00669 490 Gene3D - 255 473 - -
Vimu6g00669 490 PANTHER PEPTIDE CHAIN RELEASE FACTOR 2 79 479 - -
Vimu6g00669 490 SMART PCRF_a_2 162 308 IPR005139 GO:0006415
Vimu6g00669 490 Gene3D Release factor 87 202 - -
Vimu6g00669 490 Hamap Peptide chain release factor 2 [prfB]. 80 480 IPR004374 GO:0005737|GO:0006415|GO:0016149
Vimu6g00669 490 SUPERFAMILY Release factor 255 480 IPR045853 -
Vimu6g00669 490 ProSitePatterns Prokaryotic-type class I peptide chain release factors signature. 359 375 IPR000352 GO:0003747|GO:0006415
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00669 Vimu-Chr6 7817631 7822717 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00669 K02836 - gmx:100775574 779.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g00669 6 7817631 7822717 Vimu6g00669 6 7817631 7822717 ECH