Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00668 ATGTTGGTGTTCTTCATTTGCGTATTGCTTTTCTTCATCCTTTTGTACAAATTCCTCACTGCTTATGGCGATTTCACTTTGATGTCTAAGAAGCAACCTAAACGCGAAGAAATTGAAGATAAGGTTGTTTGGATTACGGGCGCTAGCCGTGGAATTGGGGAGATTTTGGCTAAACAGCTTGCAAGTTTAGGGGCCAAGCTTATAATCTCTGCGAGGAATGAAGTTGAGCTAAGCCGAGTAAGGACACAACTGAAAGGTAAGCATGCACCTGATGAAGTCAAGATTTTACCATTGGATTTATCCTCTGGAGAGGATTCTCTAAGGATAGCTGTTGAGAAAGCAGAATCCTTTTTTCCAGATTCCGGTGTTGATTACATGATCCATAATGCAGCTTTTGAGCGTCCTAAAACATCAATTTTAGATGTAACTGAGGAAGGTCTTAAGGCTACTTTTGATGTCAATGTTTTTGGGACAATAGCTCTTACAAAGCTCTTGACACCTTTCATGTTAAAGAGGGGGCATGGTCATTTTGTGGTGATGAGTAGTGCAGCAGGAAAGACACCTGCCCCAGGTCAAGCTGTATACTCTGCTTCCAAATATGCGCTCAATGGTTACTTCCATACCTTGCGTTCAGAGCTCTGTCAGAAAGGGATTCGAGTAACTGTGGTCTGTCCTGGTCCAATAGAAACGTCAAATAATGCTGGATCAAAGGTTCCATCTGAGAAGCGTGTGTCATCTGAAAAGTGTGCGGAGCTGACTATCATTGCTGCAACCCATGGCTTAAAGGAAGCTTGGATATCATATCAGCCTGTGCTTGCTGTCATGTATCTTGTTCAGTACATGCCATCTGTTGGTTATTGGCTCATGGACAAGGTTGGCAAAAATCGAGTAGAAGCTGCCGAAAAGAAGGGAAACACATATTCTTTGAGCCTACTGTTTGGAAAAAAGAAGGCCACTTGA 960 0.4271 MLVFFICVLLFFILLYKFLTAYGDFTLMSKKQPKREEIEDKVVWITGASRGIGEILAKQLASLGAKLIISARNEVELSRVRTQLKGKHAPDEVKILPLDLSSGEDSLRIAVEKAESFFPDSGVDYMIHNAAFERPKTSILDVTEEGLKATFDVNVFGTIALTKLLTPFMLKRGHGHFVVMSSAAGKTPAPGQAVYSASKYALNGYFHTLRSELCQKGIRVTVVCPGPIETSNNAGSKVPSEKRVSSEKCAELTIIAATHGLKEAWISYQPVLAVMYLVQYMPSVGYWLMDKVGKNRVEAAEKKGNTYSLSLLFGKKKAT 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00668 319 PANTHER NAD(P)-BINDING ROSSMANN-FOLD SUPERFAMILY PROTEIN 2 318 - -
Vimu6g00668 319 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 182 210 IPR020904 GO:0016491
Vimu6g00668 319 PRINTS Glucose/ribitol dehydrogenase family signature 169 185 IPR002347 -
Vimu6g00668 319 PRINTS Glucose/ribitol dehydrogenase family signature 42 59 IPR002347 -
Vimu6g00668 319 PRINTS Glucose/ribitol dehydrogenase family signature 121 132 IPR002347 -
Vimu6g00668 319 PRINTS Glucose/ribitol dehydrogenase family signature 216 233 IPR002347 -
Vimu6g00668 319 PRINTS Glucose/ribitol dehydrogenase family signature 195 214 IPR002347 -
Vimu6g00668 319 Gene3D - 23 298 - -
Vimu6g00668 319 Pfam short chain dehydrogenase 41 234 IPR002347 -
Vimu6g00668 319 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 38 290 IPR036291 -
Vimu6g00668 319 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 41 230 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00668 37 226 Acyl Lipid Metabolism Gene Families AT3G55310 31.443 3.36e-17 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00668 K11165 - gmx:100795991 589.726
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g00668 6 7812835 7817055 Vimu6g00668 6 7812835 7817055 ECH