Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00666 ATGGCGGAAAATTCTTCAACTGAGCTGAACAAGTTTGTGTTTTTTTGTTTGTTGCTGATACAAGTTGCAGTTTCTGAAATTATATTTGAAGAACGCTTTGAGGATGGATGGCGAAGTCGGTGGGTAAAATCAGACTGGAAAAGCAGTGAGGGCAAAGCAGGTTCTTTCAAACACACAGCTGGCCAATGGCATGGTGATCCTGATGATAAAGGTATTCAAACATCCAGTGATGCCAAACACTTTGCCATCTCTGCTAAAATACCAGAATTCACCAACAAGAACAGAACATTGGTCCTCCAGTATTCTGTAAAATTTGAACAGGAGATTGAGTGTGGTGGAGGTTACATCAAGCTTCTCTCTGGATTTGTTAATCAAAAGAAGTTTGGTGGGGATACACCTTATATGTATGTTCCTTATTCCATGTTTTCCACTTTGTTTTTGCTTCTTGGTTTATATCAAATGAACGAATGGTAA 474 0.3903 MAENSSTELNKFVFFCLLLIQVAVSEIIFEERFEDGWRSRWVKSDWKSSEGKAGSFKHTAGQWHGDPDDKGIQTSSDAKHFAISAKIPEFTNKNRTLVLQYSVKFEQEIECGGGYIKLLSGFVNQKKFGGDTPYMYVPYSMFSTLFLLLGLYQMNEW 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00666 157 Gene3D - 18 142 - -
Vimu6g00666 157 ProSitePatterns Calreticulin family signature 1. 104 119 IPR018124 GO:0005509
Vimu6g00666 157 PANTHER CALRETICULIN AND CALNEXIN 12 135 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vimu6g00666 157 SUPERFAMILY Concanavalin A-like lectins/glucanases 21 135 IPR013320 -
Vimu6g00666 157 Pfam Calreticulin family 29 134 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00666 Vimu-Chr6 7787144 7788750 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00666 12 134 Miscellaneous Gene Families AT5G61790 32.593 1.39e-10 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00666 K08057 - gmx:100801827 263.077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g00666 6 7787144 7788750 Vimu6g00666 6 7787144 7788750 ECH