Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00654 ATGAGTGAGAGAATTTTGTGTGGATTCAGATATATAAGTATTGATGGAGATTATAAGAGTGGGAAGAACTTGTTCTACTACTTCGTGAGTTCAGAAAGAAGTGCAGAGAAGGACCCAGTGGTGCTATGGCTGAATGGTGGACCTGGGTGTTCAAGCTTGGATGGCTTCGTTTATGAGCATGGACCATTCAACTTTGAGGCTGCAAAATCAAAAGAGAATCTACCCACTTTGCATATCAATCCATACAGCTGGTCAAAGGTTTCTAACATTATATATTTGGATTCTCCTGCTGGTGTTGGACTCTCTTATTCCAAGAACACAAGCAAATATGTCACTGGGGACCTGCAAACTGCGTCTGATACCCATCTTTTTCTCTTAAAGTGGTTCCAGCAATTCCCAGAATTTCAGGCTAATCCATTTTATATTGCTGGAGAGTCTTACGCTGGAGTTTATGTGCCTACTCTGGCTTTTGAAGTTGCTAAAGGTAACAATGCTAAAGGTTACATAGTTGGAAATGGTGTCACGGACGAAAGATTTGATGGCAATGCTTTCATCCCATTTGCGCATGGGATGGGTCTCATATCAGACAGTATCTACGAGGATTTACTAGCTACATGCAAAGGAAACTACTACGATGCTTACTCTTTGGACGAAAATGATCCGTGTTATAAAAGCATTGTAAAAGTTGATAGGGCCATAGATGGGCTTAACGTGTACAATATACTCGAGCCATGCTACCACTTCCCTGACACAACCAAAGAAAATGGAAGCTTACCAACAAGTTTCAAGCAATTAGGAGTTACTGAGAAGCCTCTCCCAGTGAGGAAGAGAATGTTTGGAAGAGCATGGCCTTTTCGAGCACCAGTCAAACCTGGTCTTGTCACATTATGGCCTGAATTGGCTGAAAAGACTCAAACGAGGCATGTCGCTTGTGTTCAGAATGATGAAGTAGCAAGCGCATGGCTGAACAACGATACTGTCAGAAAAGCCATTCATGCTGAATCGGAAAGTGTGGCAGGTGCATGGGAATTATGTACAGATAGGATAAAGTACGATCACAATGCTGGAAGCATGATTCCCTACCACAAGAACCTAACCAAGATGGGCTACAAGGCACTTATTTTCAGTGGTGATCATGATATGTGTGTACCATTTACTGGAAGTGAGGCTTGGACTCGATCTCTGGGATATAAGATCGTGGATGAATGGAGGCCATGGAACTCAAACGACCAAGTTGCTGGGTACTTGCAAGAATACGAGAACAATCTCACATTCTTAACAATCAAGGGAGCTGGGCACACCGTGCCGGAATATAAGCCACGGGAAGCGTTGGAATTCTTCAGCCATTGGTTGGAAGGAAAGACAATATAA 1371 0.4296 MSERILCGFRYISIDGDYKSGKNLFYYFVSSERSAEKDPVVLWLNGGPGCSSLDGFVYEHGPFNFEAAKSKENLPTLHINPYSWSKVSNIIYLDSPAGVGLSYSKNTSKYVTGDLQTASDTHLFLLKWFQQFPEFQANPFYIAGESYAGVYVPTLAFEVAKGNNAKGYIVGNGVTDERFDGNAFIPFAHGMGLISDSIYEDLLATCKGNYYDAYSLDENDPCYKSIVKVDRAIDGLNVYNILEPCYHFPDTTKENGSLPTSFKQLGVTEKPLPVRKRMFGRAWPFRAPVKPGLVTLWPELAEKTQTRHVACVQNDEVASAWLNNDTVRKAIHAESESVAGAWELCTDRIKYDHNAGSMIPYHKNLTKMGYKALIFSGDHDMCVPFTGSEAWTRSLGYKIVDEWRPWNSNDQVAGYLQEYENNLTFLTIKGAGHTVPEYKPREALEFFSHWLEGKTI 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00654 456 FunFam Carboxypeptidase 310 455 - -
Vimu6g00654 456 ProSitePatterns Serine carboxypeptidases, histidine active site. 423 440 IPR033124 GO:0004185
Vimu6g00654 456 Pfam Serine carboxypeptidase 17 453 IPR001563 GO:0004185|GO:0006508
Vimu6g00654 456 PRINTS Carboxypeptidase C serine protease (S10) family signature 423 436 IPR001563 GO:0004185|GO:0006508
Vimu6g00654 456 PRINTS Carboxypeptidase C serine protease (S10) family signature 128 153 IPR001563 GO:0004185|GO:0006508
Vimu6g00654 456 PRINTS Carboxypeptidase C serine protease (S10) family signature 93 103 IPR001563 GO:0004185|GO:0006508
Vimu6g00654 456 PRINTS Carboxypeptidase C serine protease (S10) family signature 80 92 IPR001563 GO:0004185|GO:0006508
Vimu6g00654 456 SUPERFAMILY alpha/beta-Hydrolases 12 454 IPR029058 -
Vimu6g00654 456 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 11 440 IPR001563 GO:0004185|GO:0006508
Vimu6g00654 456 ProSitePatterns Serine carboxypeptidases, serine active site. 142 149 IPR018202 GO:0004185
Vimu6g00654 456 Gene3D - 308 455 - -
Vimu6g00654 456 Gene3D alpha/beta hydrolase 9 276 IPR029058 -
Vimu6g00654 456 FunFam Carboxypeptidase 4 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00654 Vimu-Chr6 7685723 7689963 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00654 317 456 Calmodulin-binding Proteins AT2G22960 48.571 2.60e-42 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00654 K16296 - gmx:100790895 814.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g00654 6 7685723 7689963 Vimu6g00654 6 7685723 7689963 ECH
Vimu6g00654 6 7685723 7689963 Vimu9g00209 9 2606188 2607986 PCT