Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00536 ATGGGTTCACTTGGAGCTTCATGTGCTCTCTGTTGTTCTGTGTTCATGATATTTTTCACTTTCAGTTTTGCTGGGGACATAGTGCACCATGATAATATTGCTCCCAAGAGACCTGGCTGTGAGAACAACTTTGTCCTGGTTAAAGTTCCAACTTGGATTGATGGTGTGGAAAGCTGTGAGTATGTTGGTGTTGGTGCAAGGTTTGGCCCTACACTGGAGTCAAAAGAAAAACGTGCTAACCATACTAGAATTGCAATTGCTGATCCTCCTGATTGTTGTAGCCTACCTAAGAATAAGCTCACTGGCGAGATCATTTTGGTGCACCGAGGACAGTGTAGTTTCACAACCAAGGCAAATATAGCTGAACAGGCTGGTGCTTCAGCCATGCTGATTATAAATTACCGTACAGAACTTTTCAAGATGGTTTGTGAAGCAAATGAAACTGATGTGGATATTGGAATACCTACTGTCATGCTTCCACAAGATGCTGGGGAAAACTTGGAAAATCACATACTAAACAACTCAGTAGTGTCTGTGCAGTTGTATTCTCCATATCGTCCAATGGTTGATGTTGCAGAAGTGTTTTTATGGCTTATGGCTGTTGGTAGTATTCTCTGTGCTTCTTACTGGTCTGCCTGGACTGCGAGAGAGTCTGCCATTGAGCAGGAGAAGCTATTAAAGGATGCTTCAGATGAATATTTAAATGCAGAGAATGCTGGTTCTAGTGCTTATGTGGAAATCAGTACTGCAGCAGCAATATCATTTGTTGTGATTGCTTCTTGTTTCTTGGTTATGCTTTACAAATTCATGGCATCATGGTTTGTTGAAGTTCTGGTGGTTCTGTTCTGCATTGGTGGGGTTGAGGGACTACAAACATGCTTGGTGGCTCTGTTATCATGTTTCAGATGGTTCCAGCATGCTGCACAAATATTTGTGAAAGTACCCTTCTTTGGTGCTGTATCATATCTGACAGTTGCTGTTACTCCCTTCTGCATAGTATTTGCTGTGCTTTGGGGTGTTTATCGCCATGTATCATTTGCTTGGATTGGTCAAGATATTCTTGGTATCACATTGATTATTACAGTTCTTCAGATTGTGCGGATACCAAATCTCAAGGTTGGAACTGTTCTTCTCAGTTGTGCCTTCCTGTATGACATCTTCTGGGTGTTTGTCTCTAAATGGTGGTTCCATGAGAGTGTCATGATAGTGGTAGCTCGAGGTGACAAGAGTGGAGAAGATGGTATCCCCATGCTGCTCAAGATACCACGTTTGTTTGATCCTTGGGGTGGTTACAGCATCATTGGTTTTGGGGACATCATCTTACCAGGGCTTCTAGTTGCATTTTCACTAAGGTATGATTGGTTAGCAAAGAAGAACCTTCGAGATGGATACTTCTTGTGGGCAATGACTGCTTATGGTTTAGGACTCCTTATCACATACATGGCTCTGAACTTGATGGATGGACATGGTCAACCTGCTTTGCTTTATATAGTCCCGTTTACACTTGGAACCTTTTTGTCATTAGGAAAGAAGAGAGGTGAACTCAAGGTACTATGGACAAGAGGGGAACCAAAAATACCTTGCCCTCACATCCAAGAGGATCAATCAACAAACCAGTAA 1620 0.4235 MGSLGASCALCCSVFMIFFTFSFAGDIVHHDNIAPKRPGCENNFVLVKVPTWIDGVESCEYVGVGARFGPTLESKEKRANHTRIAIADPPDCCSLPKNKLTGEIILVHRGQCSFTTKANIAEQAGASAMLIINYRTELFKMVCEANETDVDIGIPTVMLPQDAGENLENHILNNSVVSVQLYSPYRPMVDVAEVFLWLMAVGSILCASYWSAWTARESAIEQEKLLKDASDEYLNAENAGSSAYVEISTAAAISFVVIASCFLVMLYKFMASWFVEVLVVLFCIGGVEGLQTCLVALLSCFRWFQHAAQIFVKVPFFGAVSYLTVAVTPFCIVFAVLWGVYRHVSFAWIGQDILGITLIITVLQIVRIPNLKVGTVLLSCAFLYDIFWVFVSKWWFHESVMIVVARGDKSGEDGIPMLLKIPRLFDPWGGYSIIGFGDIILPGLLVAFSLRYDWLAKKNLRDGYFLWAMTAYGLGLLITYMALNLMDGHGQPALLYIVPFTLGTFLSLGKKRGELKVLWTRGEPKIPCPHIQEDQSTNQ 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00536 539 Pfam PA domain 90 167 IPR003137 -
Vimu6g00536 539 SUPERFAMILY PA domain 90 139 IPR046450 -
Vimu6g00536 539 Pfam Signal peptide peptidase 243 523 IPR007369 GO:0004190|GO:0016020
Vimu6g00536 539 FunFam Signal peptide peptidase-like 3 46 185 - -
Vimu6g00536 539 PANTHER SIGNAL PEPTIDE PEPTIDASE 70 531 IPR007369 GO:0004190|GO:0016020
Vimu6g00536 539 SMART psh_8 243 512 IPR006639 GO:0004190|GO:0016020
Vimu6g00536 539 Gene3D - 40 184 - -
Vimu6g00536 539 Coils Coil 219 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00536 Vimu-Chr6 6567125 6573923 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00536 K09597 - gmx:100808921 1046.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g00536 6 6567125 6573923 Vimu6g00536 6 6567125 6573923 ECH
Vimu6g00536 6 6567125 6573923 Vimu9g00293 9 3560356 3569890 PCT