Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00453 ATGTGGAAGGTTGTACGATTCGCGGCTTCCAGATCACGGCGATTCTCCACGGCGATTCCCGGGCCGTGCAAGGTCCACAAGCGGGGCACTGATATCCTCCATGATCCGTGGTTCAACAAGGATACTGGGTTTCCCATAACTGAAAGGGATCGATTGGGACTTCGGGGCCTTCTTCCACCTCGTGTCATTTCATTTGAGCATCAATATGATCGGTTTACCGTAATATATTATTATTTTTCAGTGGATTCATATAGATCTTTGGAGAAGAATACACGGGGCCAATCAGATAAATTTGTTGCCTTATCCAAATGGAGGATCTTAAATAGATTGCATGACAGGAATGAGATTCTGTATTACCGAGTTCTTATCCGTAACATCAAAGAGTTTGCTCCTATAATATATACTCCTACAGTTGGATTAGTGTGTGAAAATTATTCAGGGTTATTTAGACGCCCGCGGGGTATGTATTTTAGTGTCAAAGATAAAGGGGAGATGATGTCAATGATCTATAACTGGCCAGCTGACGAGGTAGACATGATTGTCCTGACAGATGGTAGCCGTATTCTTGGCTTGGGTGACCTTGGCGTTCAGGGCATAGGAATACCTATAGGAAAACTTGATATGTATGTTGCTGCTGCTGGTATCAACCCACGAAAAATACTTCCAGTTATGTTAGATGTTGGTACAAACAATGAAAAGCTACTCAAAGATCCCCTTTATTTAGGAGTTCGACAGCCTAGGTTGGAAGGTGAAGAGTACCTATCGATTGTTGATGAGTTCATGGAAGCTGTACACGCTCGATGGCCTAAGGCTATTGTTCAGTTTGAGGATTTCCAAATGAAGTGGGCTTTTGAAACCCTTAAACGATATAGACAAAGGTTTTGCATGTTTAATGATGATATACAGGGCACTGCCGGTGTTGCACTTGCTGGGCTATTGGGAACTATAAGATCCCAAGGTGGACCGTTGTCTGATTTTTTGAAACAAAAGATAGTTGTTGTTGGAGCTGGGAGTGCAGGGCTTGGTGTTCTTAAGATGGCTGCCCAGGCTGTTTCAAGAATGTCAGGGGGTAGTGGAACGGCGGCCACTGCTAACAGCCCGTTTTTTTTAATTGATAAAAGTGGTCTTGTCACCACGGAAAGGAGCAATCTAGATCCAGCTGCTGTTCCATTTGCCAAAAATCCAAGAGATCTTGAAGGGCTTACAGAGGGTGCTAGTATAATTGAAGTGGTTAAGAAGGTTAAGCCACACGTGCTACTTGGATTGTCTGGAGTTGGTGGTGTTTTTGACACGGAGGTGCTTAAGGCAATGAGAGAATCTGCTTCAACAAAACCAGCTATCTTTGCAATGTCTAATCCCACCGTGAATGCTGAGTGCACTGCTATTGAAGCTTTCAGTCATGCTGGAAAAAATATCGTTTTTGCAAGTGGAAGCCCTTTTGACGATGTAGATCTCGGAAATGAAGTTGGCCATGTCAATCAAGCCAACAATATGTACCTATTCCCAGGGATTGGTTTGGGTTCACTTCTATCGGGTGCTCGTCATATAACAGACGAAATGTTGCGAGCAGCAGCTGAATGCCTTGCTTCATATATGACAGATGAGGAGGTCCAAAAAGGAATCTTGTTTCCATCCATTGACTGTATTCGGAATGTTACAGCTGAGGTTGGAGCTGCTGTTATTGGTGCTGCGGTTGCAGAAAATCAGGCTGAAGGGCATGGTGATATAGGGTTGAGAGAACTAGCAAACATGTCAAAAGAAGATACTGTGGAGTATGTGAGAGGCAATATGTGGTACCCTGAGTATTCCCCCCTTGTTCATGAAAAATGA 1830 0.4377 MWKVVRFAASRSRRFSTAIPGPCKVHKRGTDILHDPWFNKDTGFPITERDRLGLRGLLPPRVISFEHQYDRFTVIYYYFSVDSYRSLEKNTRGQSDKFVALSKWRILNRLHDRNEILYYRVLIRNIKEFAPIIYTPTVGLVCENYSGLFRRPRGMYFSVKDKGEMMSMIYNWPADEVDMIVLTDGSRILGLGDLGVQGIGIPIGKLDMYVAAAGINPRKILPVMLDVGTNNEKLLKDPLYLGVRQPRLEGEEYLSIVDEFMEAVHARWPKAIVQFEDFQMKWAFETLKRYRQRFCMFNDDIQGTAGVALAGLLGTIRSQGGPLSDFLKQKIVVVGAGSAGLGVLKMAAQAVSRMSGGSGTAATANSPFFLIDKSGLVTTERSNLDPAAVPFAKNPRDLEGLTEGASIIEVVKKVKPHVLLGLSGVGGVFDTEVLKAMRESASTKPAIFAMSNPTVNAECTAIEAFSHAGKNIVFASGSPFDDVDLGNEVGHVNQANNMYLFPGIGLGSLLSGARHITDEMLRAAAECLASYMTDEEVQKGILFPSIDCIRNVTAEVGAAVIGAAVAENQAEGHGDIGLRELANMSKEDTVEYVRGNMWYPEYSPLVHEK 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00453 609 ProSitePatterns Malic enzymes signature. 297 313 IPR015884 GO:0004471
Vimu6g00453 609 SMART malic_2 111 291 IPR012301 GO:0004471
Vimu6g00453 609 PRINTS Malic enzyme signature 117 141 IPR001891 GO:0004470|GO:0004471
Vimu6g00453 609 PRINTS Malic enzyme signature 331 347 IPR001891 GO:0004470|GO:0004471
Vimu6g00453 609 PRINTS Malic enzyme signature 213 235 IPR001891 GO:0004470|GO:0004471
Vimu6g00453 609 PRINTS Malic enzyme signature 442 458 IPR001891 GO:0004470|GO:0004471
Vimu6g00453 609 PRINTS Malic enzyme signature 297 313 IPR001891 GO:0004470|GO:0004471
Vimu6g00453 609 PRINTS Malic enzyme signature 272 290 IPR001891 GO:0004470|GO:0004471
Vimu6g00453 609 PRINTS Malic enzyme signature 177 206 IPR001891 GO:0004470|GO:0004471
Vimu6g00453 609 FunFam Malic enzyme 299 609 - -
Vimu6g00453 609 Pfam Malic enzyme, N-terminal domain 111 291 IPR012301 GO:0004471
Vimu6g00453 609 Gene3D - 299 609 - -
Vimu6g00453 609 FunFam Malic enzyme 27 298 - -
Vimu6g00453 609 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 301 606 IPR036291 -
Vimu6g00453 609 Pfam Malic enzyme, NAD binding domain 301 564 IPR012302 GO:0051287
Vimu6g00453 609 PIRSF ME 5 608 IPR001891 GO:0004470|GO:0004471
Vimu6g00453 609 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 14 300 IPR046346 -
Vimu6g00453 609 SMART Malic_M_2 301 565 IPR012302 GO:0051287
Vimu6g00453 609 Gene3D - 27 298 IPR037062 GO:0004471
Vimu6g00453 609 PANTHER MALIC ENZYME-RELATED 16 603 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00453 Vimu-Chr6 5327176 5334170 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00453 K00028 - gmx:100795823 1051.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g00453 6 5327176 5334170 Vimu6g00453 6 5327176 5334170 ECH
Vimu6g00453 6 5327176 5334170 Vimu9g00373 9 4415009 4422694 PCT