Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02876 ATGAGTGAGAGTAACGGGAACAGTAAGAGGCCAAATGTTGAAGATCAAGATCTGGGACTGTACTTCTTGGAAGCGTGCAGGGGAAGGGAGATGAGAGAGAGGGAGAAGGAGAAGGAGAAAGAGACAGAGGAGGAGGAGGAGGAGGCGCCGAGGGAGCTCAACACGATTAACAGCTCCGGTGGCTTCGTGGTGGTGTCAACAGACAAGCTGTCGGTGAAGTACACCAACGTCAACCTTCACGGCCACGATGTCGGCGTCATTCAGGCCAACAAGCCTTCTCCTACCAAGCGCCTCATCTACTATTTCGAGATTCATGTCAAGGATGCTGGCGTCAAGGGTCAAATTTCCATTGGCTTCACCTCCGAGACATTCAAGATGCGAAGGCAGCCAGGGTGGGAGGCCAATAGCTGCGGCTATCATGGTGACGATGGTCTTCTTTACCGTGGACATGGCAAGGGGGAAGCGTTTGGTCCAACCTATACGTCGGGTGATGTAGTTGGTGCCGGAATTAACTACGCCGCGCAGGAATTCTTTTTCACTAAAAATGGCCAAGTTGTCGGCTCTGTTTACAAAGACTTGAAAGGCCCCCTTTTTCCTACTATAGCAGTTCATAGCCAAAATGAGGAGGTGCATGTTAACTTTGGGCAGAAACCATTTACTTTCGACTTAAAAGAATTTGAAGCACAAGAAAGAATGAAGCAGCAACTGAAAATAGAGGAAATTTCTGTGCCACCAAATGTCAGTTACGGGAAGTACTGGTCTTCACTAGTTGCACAGTGCAGCTTTTTATGGTTTAGGAAGGTTGAGATTAATCTATTGAACCCTAGAATTGTCCGCTCCTACCTGCTGCACTATGGCTATGAAGATACATTGAATTCATTTGATGTGGCTAGTAAAAGTACTGTTCCTCCTATATACATAGCTCAAGAAAGTGGAGTTGATGAGCAGGAAATAACATATGCGTTAAATCATAGAAAGACTCTTCGGCAGCTAATCAGGAATGGAGACATTGATGTTGCATTTGGTAAATTGCGGGAATGGTATCCACAAATTGTTGAGGACAACACATCAGCTACATGCTTTCTGCTACATTGTCAAAAATTTATCGAATTAGTTCGGGTTGGAGCGCTTGAGGAGGCAGTCAGATATGGAAGAATAGAATTGTCTAGTTTTTACGACTTTCCTGTCTTTAAAGATTTAGTTCAGGACTGTGTTGCTTTGCTGGCATATGAACGGCCTCTAGAATCTTCCGTAGGCTATCTTCTAAAAGACTCGCAGCGTGAAGTTGTAGCTGACACGGTAAATGCCATGATTTTGTCCACAAATCCCAATATGAAAGAATCAAAACATTGCTTGCAGTCTTATCTGGAGAGGTTACTTAGACAGCTCACTGCTTGCTGCTTAGAGAGACGAGCACTGAATGGAGAGCAGGGAGAAGCTTTCCAACTTCAGAGATTACTTAGCAGTAGTAGAAGAGGCTAG 1482 0.4514 MSESNGNSKRPNVEDQDLGLYFLEACRGREMREREKEKEKETEEEEEEAPRELNTINSSGGFVVVSTDKLSVKYTNVNLHGHDVGVIQANKPSPTKRLIYYFEIHVKDAGVKGQISIGFTSETFKMRRQPGWEANSCGYHGDDGLLYRGHGKGEAFGPTYTSGDVVGAGINYAAQEFFFTKNGQVVGSVYKDLKGPLFPTIAVHSQNEEVHVNFGQKPFTFDLKEFEAQERMKQQLKIEEISVPPNVSYGKYWSSLVAQCSFLWFRKVEINLLNPRIVRSYLLHYGYEDTLNSFDVASKSTVPPIYIAQESGVDEQEITYALNHRKTLRQLIRNGDIDVAFGKLREWYPQIVEDNTSATCFLLHCQKFIELVRVGALEEAVRYGRIELSSFYDFPVFKDLVQDCVALLAYERPLESSVGYLLKDSQREVVADTVNAMILSTNPNMKESKHCLQSYLERLLRQLTACCLERRALNGEQGEAFQLQRLLSSSRRG 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02876 493 CDD SPRY_RanBP_like 85 215 IPR044736 -
Vimu5g02876 493 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 321 379 IPR006595 -
Vimu5g02876 493 MobiDBLite consensus disorder prediction 31 55 - -
Vimu5g02876 493 SMART SPRY_3 97 218 IPR003877 GO:0005515
Vimu5g02876 493 SMART toby_final6 375 476 IPR013144 -
Vimu5g02876 493 SMART ctlh 321 379 IPR006595 -
Vimu5g02876 493 Pfam CTLH/CRA C-terminal to LisH motif domain 323 466 IPR024964 -
Vimu5g02876 493 FunFam Ran-binding protein M homolog 29 229 - -
Vimu5g02876 493 ProSiteProfiles B30.2/SPRY domain profile. 31 219 IPR001870 -
Vimu5g02876 493 PANTHER RAN BINDING PROTEIN 9-RELATED 50 469 - -
Vimu5g02876 493 Pfam SPRY domain 99 216 IPR003877 GO:0005515
Vimu5g02876 493 Gene3D - 26 235 IPR043136 -
Vimu5g02876 493 Coils Coil 28 49 - -
Vimu5g02876 493 SUPERFAMILY Concanavalin A-like lectins/glucanases 57 221 IPR013320 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02876 K23334 - gmx:100805319 853.973