Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02872 ATGGCGAAATCGGGATCAACCCCTGTCACTTCCTCTGCAAAGGTTCATCCTTCCAACGATCCCGAACTGGACCCGGACTCTTACGCCCTCGAGAAGTTCAGACTCTACGAAACCAGAGCGAGGTTCTACCTGATCGGAAGTGATCGGAGCAAGAGGTTCTTCCGAGTGTTGAAAATCGATCGATCAGAGCCGTCGGATCTGAATATCAGCCAAGACCCCGTCCTGTATTCACCCCAGGAGATCAAGAGCTTGCTTCAGCGGATTGCTGAGGGTAACAGAGCCACTGGCGGCCTCACTTTCGTCGCTAAGGTTTTCGGAATTGCTGGCTGCATCAAGTTTCTAGAGTCTTACTACTTGATACTCGTTACTAAACGTAGACAGATTGGTGCTATATGTGGCCATGCAATCTATAGCATCAAGGAGAGCCAATTGATAACCATTCCACACGTTTCAATCCAATCTGATTTAGCTCACTCTAAAACTGAGCTCAGGTACAAAAAGCTTTTGTCTAGTGTCGATTTGACCAAGGATTTTTTCTATAGTTACACTTACCCTATAATGCAAAGTTTGCAAAAGAACGTATCTCCTAGCGAAGACGGAGGGATGTCGTATGATAATATATTTGTTTGGAATGCATATTTGACACAAGCAATCAGGTCAAGATGCAATAACACTATTTGGACCATAGCTTTAGTTCATGGTCATTTTAGACAGAGTCGTCTATCAATTTTTGGAAGAGACTTCAGTGTTTCCCTGATTTCTAGACGATCTAGACATTTTGCAGGGACACGTTACTTGAAAAGGGGTGTTAATGATCGGGGGAGGGTTGCTAATGATGTTGAGACAGAGCAGATTGTCCTTGATGAAGAAGCTGGCTCTTGCAAGGGGAAAATGAGTTCAGTTGTGCAAATGCGTGGATCAATACCACTTTTTTGGTCACAAGAAGCATCAAGATTTAGCCCTAAGCCTGACATAATTTTGCAGAGGTATGATCCGACCTACGAAGCAACTAAATTGCATTTTGAAGACCTTGCTAAGAGATATGGCAATCCAATTATTGTTCTGAATTTGATTAAGACAGTTGAGAAAAGGCCTCGAGAAATGATGCTGAGACGTGAATTTGCAAGTGCTGTTGGTTATCTTAACCAAATTCTACCAGTAGAGAACCATCTTAGATTTATTCACTGGGACTTTCACAAATTTGCAAAAAGCAAGTCTGCCAATGTTTTAGCAGTTTTAGGAGCTGTAGCAAGTGAAGCGCTTGATTTAACTGGTTTTTACTACAGTGGTAAACCCAGTATAATAAAGAGAGCCAACAAGAGTAATCGAACTAGCACAGGAAGGTTCGCGCTTGCCGTTGTTTTCCTCGCTCCAGATCTCGCCTCCTTCGAGTTCTGCGTGGATGCTTCACTGAGAGATCTGAGAGCTAGTTCTGGTGATATTGGGAGGATTGGGAACAGTAATGAAATGATAAACTCTGTGGTTAACCGAGACAAAGAGACTGACACTAACCATCAGAATAAAAATGATAATTTTAGTAGTGATGCACCACATTTTCAGAGTGGAGTTCTTCGTACCAACTGCATTGACTGCTTGGACCGTACAAATGTTGCCCAGTATGCATATGGTCTTCAAGCTTTAGGACGCCAGCTCCATGTAATGGGTTTGACTGATGTGCCCAAAGTGGATCCTGATAGTAGTATCGCTGCAGCTCTAATGGATATGTATCAAAGCATGGGGGATGCTCTTGCTCAGCAGTATGGTGGTTCAGCAGCTCACAATACTGTGTTTCCGGAGAGGCAGGGAAAGTGGAAAGCAACAACACAATCAAGAGAGTTTTTGAAGTCCATAAAACGATATTATAGCAATGCTTACACAGATGGCGAAAAGCAAGATGCAATAAACTTATTTTTAGGTTACTTCCAACCACATGAAGGGAAACCTGCTCTGTGGGAGCTGGATTCAGATTATTATCTCCATGTATCTGGGGTTGGGGATGATCTAATTCCTGAGAAGTGTTCTGAACCGAATCCTAAGCCTTCTGAAAGTGGTGGAATAGTATTCACCCCAATACCAGCTTGCAGAGAAGACTTTTTACGGATAAAGTTGACATCGTTTGACAAGTTAATTGAGAAGACCTGTAGTACAATTAAAAATGTAAGACTATGCTCTGAACCTGATCAGAGACCAGGTGGGAGTTCTGGAAACAGTGGAGTGGCACCTGATGCAGCTGAGATACAGCTAAAAAGCCCGAATTGGCTTTTTGGCCAGAGAAAGTACGAAGAGGGTTCCTCTGCTGCAAAAGTAGCTTCTCATGAAACTGACATTGAAGGATCTCATGCTAATGGATTTTGTGACTTGAATTGGCTTTCTTCTGGCAGTGATATGAATGAAGAGGATGTTTTCCAAAGGTACCTTGCAATGACCTCAGCAAATGAGGCGAATGGGTGGTATGGAGGTAGTCTCCTCGGCGATCAAGATGAAAGCAGTGAGATATATAAACATTATGCCGAGCTATGTCAGGGACCTGCCTTGGAACTTTTCCAAAATGACTCTGAGAGGGAGCAACACTATGCAGATGCTTTAAGCACGAGTTCATATGAAATTGTTAATGATACTAGCGTTGCGACAGAAATGGAAGCAGCTCTAAAGGAGTATGACCAAGTTGGTGCTGACCTTGGGATCATTCCCAGATCTTGTAAATTCTTTGCTGATGATCCGAGTTGGCTTACAAGATGGTTAACTGGGGAAGAAAAACTACAAAGGATATGA 2772 0.4293 MAKSGSTPVTSSAKVHPSNDPELDPDSYALEKFRLYETRARFYLIGSDRSKRFFRVLKIDRSEPSDLNISQDPVLYSPQEIKSLLQRIAEGNRATGGLTFVAKVFGIAGCIKFLESYYLILVTKRRQIGAICGHAIYSIKESQLITIPHVSIQSDLAHSKTELRYKKLLSSVDLTKDFFYSYTYPIMQSLQKNVSPSEDGGMSYDNIFVWNAYLTQAIRSRCNNTIWTIALVHGHFRQSRLSIFGRDFSVSLISRRSRHFAGTRYLKRGVNDRGRVANDVETEQIVLDEEAGSCKGKMSSVVQMRGSIPLFWSQEASRFSPKPDIILQRYDPTYEATKLHFEDLAKRYGNPIIVLNLIKTVEKRPREMMLRREFASAVGYLNQILPVENHLRFIHWDFHKFAKSKSANVLAVLGAVASEALDLTGFYYSGKPSIIKRANKSNRTSTGRFALAVVFLAPDLASFEFCVDASLRDLRASSGDIGRIGNSNEMINSVVNRDKETDTNHQNKNDNFSSDAPHFQSGVLRTNCIDCLDRTNVAQYAYGLQALGRQLHVMGLTDVPKVDPDSSIAAALMDMYQSMGDALAQQYGGSAAHNTVFPERQGKWKATTQSREFLKSIKRYYSNAYTDGEKQDAINLFLGYFQPHEGKPALWELDSDYYLHVSGVGDDLIPEKCSEPNPKPSESGGIVFTPIPACREDFLRIKLTSFDKLIEKTCSTIKNVRLCSEPDQRPGGSSGNSGVAPDAAEIQLKSPNWLFGQRKYEEGSSAAKVASHETDIEGSHANGFCDLNWLSSGSDMNEEDVFQRYLAMTSANEANGWYGGSLLGDQDESSEIYKHYAELCQGPALELFQNDSEREQHYADALSTSSYEIVNDTSVATEMEAALKEYDQVGADLGIIPRSCKFFADDPSWLTRWLTGEEKLQRI 923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02872 923 PANTHER POLYPHOSPHOINOSITIDE PHOSPHATASE 19 866 IPR043573 GO:0043813|GO:0046856
Vimu5g02872 923 MobiDBLite consensus disorder prediction 1 23 - -
Vimu5g02872 923 Pfam SacI homology domain 105 401 IPR002013 GO:0016791
Vimu5g02872 923 ProSiteProfiles Sac phosphatase domain profile. 169 589 IPR002013 GO:0016791
Vimu5g02872 923 MobiDBLite consensus disorder prediction 1 17 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02872 Vimu-Chr5 37848112 37859552 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02872 1 923 Acyl Lipid Metabolism Gene Families AT1G22620 73.362 0.0 1424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02872 K22913 - gmx:100800092 1689.09