Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02871 ATGTTTGAAAAAACCATTGGATTTGGAAGCGGTGTGAGAAGGAGGAAGCAACCAACTCAACTCCATTTCTTGGCTGATGGAGTCTCGTTCTCACATTCACAGGCACTGGTAATCAAATCAATTAGACCTTTTTTTGTTTCACGCAACCTTCGTCGTTGTTCTTTTTTTTCTTTCTCATCCACTAACCCTATGCCCCAATTTGTAAAGTTTCGGCTTTTCCCGCGTTGCCACGCACTCAAAACCCTTCCTTTCTCCACCCACCGAATGGGCATGGTCGATACCCTCTGTACCCATCTCCACCAAAGCAATGGGAGTGTTGAGAACTCATTGTCCAAGGTTAAGCCTAAACTCGATTCTCAATGTGTCATTGAAGTCCTCAATTCCTGTCATTCCAAGCAACCTCTATTGGGCGTCAGATTTTTCGTTTGGGCTGGATATCAATCTGGCTACAGGCACAGTGCTTACACGTACAGCAAAGCTTGCAAGTTGTTTGGGATTCAGCAAAATCCCCAAATTATTCGTGATGTCGTTCTGTCTTACGAGGCCGAAGGGTGTTTAGTCAATGTCAACATGTTCAGGGAGGTTCTGAAACTGTGCAAAGAAGCCCAACTAGCTGACTTGGCATTGTGGGTGTTGAGGAAGATGGAGCAGAGTTTCAACATCGGTGCTGACACTGTGATGTATAATGTGGTTATTAGGCTATGTTGCAAGAATGGCGACATTGAAACGGCTGAGAAGTTGATCGGGGAGATGAGTTTGAACGGTCTTTACCCTGATCTTATTACGTACATGGCAATAGTGGAGGGATTATGTGATGCAGGTCGCCCAGAGCATGCTTATTCTTTGCTTAAGGTTATGAGAGTACATAAATGTTCAACCAATTTGGTCCTTTTATCAGCCATTTTAAATGGTTTGTGTAGGTCTGGATCTATGAAAATGGCATTGGAGTTGTTGGATGAAATGGAGAAAGGTGGGGATTGCCGTCCAAATGTTGTTACTTATACATCTGTGATTCAAAGTTTCTGTAAGAGAGGTCAGTGGACGGAAGCATTGGATATTCTGGATAGAATGAAAGCTTCGGGGTGCCATGCAAATCATGTTACTGTTTTTACTTTGGTTGATAGCCTTTGTGTTGAGGGTCGTGTGGGAGAAGCTTACAAGTTGATTGATAAGTTTGTGGTGGAACATCGTGTTTCTTATGGTGATTGTTGCAGTTCACTTGTGATTTCATTGATAAGGATTAAAAAGCTGGACGAAGCAATGAAGCTCTTCATGGAAATGCTTTCTGGTGATGCCAGACCTGATACTTTGGCATCTAGCCTTTTGCTAAAGGAGCTCTGTATGAAGGACCAGGTATTGGATGGATTCTACTTGCTTGAAACAATTGAGAACAAGGGATGTTTGTCTGCCATTGACTCTAGTATTTATTCTATTCTTTTATTTGGCCTTTGTCAAAGAAGCCACCTGACGGAGGCCACAGAGCTGGCCAAGATAATGCTTAAAAAATCAGTTCCGCTGCAACCTCCGTACAAAGATGGTGCAATCGATGTCCTAATAGAATCTGGAGAAAAAGATATTGTGAACCAGTTGACTGGCATTGGTAAGGGACTTTGA 1614 0.4287 MFEKTIGFGSGVRRRKQPTQLHFLADGVSFSHSQALVIKSIRPFFVSRNLRRCSFFSFSSTNPMPQFVKFRLFPRCHALKTLPFSTHRMGMVDTLCTHLHQSNGSVENSLSKVKPKLDSQCVIEVLNSCHSKQPLLGVRFFVWAGYQSGYRHSAYTYSKACKLFGIQQNPQIIRDVVLSYEAEGCLVNVNMFREVLKLCKEAQLADLALWVLRKMEQSFNIGADTVMYNVVIRLCCKNGDIETAEKLIGEMSLNGLYPDLITYMAIVEGLCDAGRPEHAYSLLKVMRVHKCSTNLVLLSAILNGLCRSGSMKMALELLDEMEKGGDCRPNVVTYTSVIQSFCKRGQWTEALDILDRMKASGCHANHVTVFTLVDSLCVEGRVGEAYKLIDKFVVEHRVSYGDCCSSLVISLIRIKKLDEAMKLFMEMLSGDARPDTLASSLLLKELCMKDQVLDGFYLLETIENKGCLSAIDSSIYSILLFGLCQRSHLTEATELAKIMLKKSVPLQPPYKDGAIDVLIESGEKDIVNQLTGIGKGL 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02871 537 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 109 504 - -
Vimu5g02871 537 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 330 364 IPR002885 -
Vimu5g02871 537 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 259 293 IPR002885 -
Vimu5g02871 537 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 294 328 IPR002885 -
Vimu5g02871 537 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 224 258 IPR002885 -
Vimu5g02871 537 Pfam PPR repeat 475 503 IPR002885 -
Vimu5g02871 537 Pfam PPR repeat 404 429 IPR002885 -
Vimu5g02871 537 Pfam PPR repeat family 224 272 IPR002885 -
Vimu5g02871 537 Pfam PPR repeat family 329 377 IPR002885 -
Vimu5g02871 537 SUPERFAMILY TPR-like 331 429 IPR011990 GO:0005515
Vimu5g02871 537 Gene3D Tetratricopeptide repeat domain 253 323 IPR011990 GO:0005515
Vimu5g02871 537 Gene3D Tetratricopeptide repeat domain 324 397 IPR011990 GO:0005515
Vimu5g02871 537 Gene3D Tetratricopeptide repeat domain 93 252 IPR011990 GO:0005515
Vimu5g02871 537 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 472 506 IPR002885 -
Vimu5g02871 537 NCBIfam pentatricopeptide repeat 299 331 IPR002885 -
Vimu5g02871 537 NCBIfam pentatricopeptide repeat 226 259 IPR002885 -
Vimu5g02871 537 NCBIfam pentatricopeptide repeat 332 365 IPR002885 -
Vimu5g02871 537 NCBIfam pentatricopeptide repeat 261 293 IPR002885 -
Vimu5g02871 537 Pfam PPR repeat 291 322 IPR002885 -
Vimu5g02871 537 Gene3D Tetratricopeptide repeat domain 399 532 IPR011990 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02871 164 508 Glycosyltransferase AT1G05670 23.958 4.45e-27 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02871 - - ccaj:109798432 757.288