Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02867 ATGGAGGACATTGAAGATTTGCTGGCCGGAAGCGGAAGCGCAACTCCCCCGGGCTTCCGTTTGCCGTTGGCGGCAGCTGTGGGCGTTGGTGTTGGCGTTGGGAGCAAGCGGAATAAACTCTCTTCTTCGCCTTCTCCTGCAATCCCTGGCACTCAGACTATCTACATAAAGACCTTTGGCTGCTCTCACAACCAGGCAAGTGTTGTGTTTCGTTGTGTTGTGTTGTGCATTGCTGTGTCGCGCATTCTGTGCTATGAGCTTTCTGCTTTTGGTTATTCTTTGAGTGACAATCCAGACCAAGCAGATCTCTGGCTCATTAACACTTGCACAGTGAAATCCCCCAGTCAATCTGCTATGGATACCATCATAACGAAAGGAAAATCTTCAAATAAACCACTAGTTGTTGCTGGCTGTGTCCCTCAAGGAAGTCGGTATTTGAAAGAGCTGGAAGGGATCAGCATAGTTGGAGTCCAGCAAATTGATCGCGTTGTTGAAATTGTAGAAGAGACTTTGAAAGGTCACGAAGTCCGCCTTTTGACCCGTAAGACATTGCCAGCACTCGACCTTCCAAAGGTAAGGAAGAACAAGTTTGTTGAGATTCTTCCTATTAATGTTGGTTGTTTAGGTGCCTGCACTTATTGCAAGACAAAGCATGCTCGGGGTCACCTAGGAAGTTATACAATCGATAGCCTTGTTGGGCGTGTGAAATCTGTCATTTCTGATGGAGTTAAAGAGATATGGCTTAGCAGTGAGGACACTGGAGCATATGGTCGTGACATTGGTGTGAATCTTCCAACTTTGTTGAAGGCCTTAGTGGAAGAACTACCAGCTGATGCAAGCACGATGCTACGTATTGGAATGACCAATCCACCTTATATCCTTGAACACTTGAAGGAGATAGCTGAGATTTTGCGGCATCCTTGTGTTTACTCCTTTCTCCATGTACCAGTTCAGTCGGGAAGTGATACTGTTTTGACCGCAATGAATAGGGAATATACTGTGAGTGAGTTCAGGACTGTTGTAGATACTCTAACTGAGCTTGTGCCAGAGATGCAGATTGCCACTGATATAATATGTGGATTTCCTGGTGAAACTGATGAAGATTTTGTGCAGACTGTCGATCTCGTTAAAGATTACAAGTTCCCTCAAGTTCACATTTCACAATTTTATCCTCGACCAGGGACACCTGCTGCAAGGATGAAAAAGGTTCCAAGTAATGTGGTTAAGAGAAGAAGCCGAGAATTGACAAATGTCTTTGAATCATTCACACCATACTCTGGGATGGAAGGCAGAGTGGAAAGAATTTGGATTACTGATGTTGCATCTGATGGAATTCACTTGGTTGGTCATACGAAAGGATATATACAAGTTCTTGTACTTGCTCCAGACCATATGCTGGGAGCTTCAGCTATGGCTAAGATAACATCTGTGGGAAGATGGTCTGTCTTTGGGGAAGTAATTGAGACAATCGACCATGTAAGTGACAATAAAGCTCTAAACAAGTTGGTTCCTAATCGGGACTTGCATTCTCTCTGCGTTAACCCAGCCAAGCCTGGTGGATTCTCAGAAGAGCCAGAATCTTGTGCATGTGGAAGTGACATCTGTTGTAGTATCGACAAGAGTGACGCTTCAAGAGGAACTGCAGTGCCACAGAACCAAAGTAATAGAAATTTCGTTGGATGGATACTAAGGAAGCGGGAGCATCTGCACAAAAAAGTTGAGAGTGAGCTTGCCTCGGGATCTGTTAAAAAGCATGAAAGAAAGATGAAGAAGTGGGACTTCGTTGATAAGGTTCTTTTTGGTGGAATATCTATCAGCATCTTTACTATTATTGCTCTTGTAGCAGCTCTTGCGTTCAGAGTAATTTGGTCCCAGTAA 1878 0.443 MEDIEDLLAGSGSATPPGFRLPLAAAVGVGVGVGSKRNKLSSSPSPAIPGTQTIYIKTFGCSHNQASVVFRCVVLCIAVSRILCYELSAFGYSLSDNPDQADLWLINTCTVKSPSQSAMDTIITKGKSSNKPLVVAGCVPQGSRYLKELEGISIVGVQQIDRVVEIVEETLKGHEVRLLTRKTLPALDLPKVRKNKFVEILPINVGCLGACTYCKTKHARGHLGSYTIDSLVGRVKSVISDGVKEIWLSSEDTGAYGRDIGVNLPTLLKALVEELPADASTMLRIGMTNPPYILEHLKEIAEILRHPCVYSFLHVPVQSGSDTVLTAMNREYTVSEFRTVVDTLTELVPEMQIATDIICGFPGETDEDFVQTVDLVKDYKFPQVHISQFYPRPGTPAARMKKVPSNVVKRRSRELTNVFESFTPYSGMEGRVERIWITDVASDGIHLVGHTKGYIQVLVLAPDHMLGASAMAKITSVGRWSVFGEVIETIDHVSDNKALNKLVPNRDLHSLCVNPAKPGGFSEEPESCACGSDICCSIDKSDASRGTAVPQNQSNRNFVGWILRKREHLHKKVESELASGSVKKHERKMKKWDFVDKVLFGGISISIFTIIALVAALAFRVIWSQ 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02867 625 PANTHER RADICAL SAM PROTEINS 1 620 - -
Vimu5g02867 625 NCBIfam MiaB/RimO family radical SAM methylthiotransferase 53 482 IPR005839 GO:0006400|GO:0016740|GO:0051539
Vimu5g02867 625 CDD Radical_SAM 201 405 - -
Vimu5g02867 625 Pfam Uncharacterized protein family UPF0004 54 143 IPR013848 GO:0035596|GO:0051539
Vimu5g02867 625 SMART MiaB 197 421 IPR006638 GO:0003824|GO:0051536
Vimu5g02867 625 SUPERFAMILY Radical SAM enzymes 187 421 - -
Vimu5g02867 625 ProSitePatterns Methylthiotransferase radical SAM domain signature. 201 221 IPR020612 GO:0051539
Vimu5g02867 625 FunFam threonylcarbamoyladenosine tRNA methylthiotransferase 53 184 - -
Vimu5g02867 625 ProSiteProfiles Methylthiotransferase N-terminal domain profile. 52 172 IPR013848 GO:0035596|GO:0051539
Vimu5g02867 625 ProSiteProfiles TRAM domain profile. 426 488 IPR002792 -
Vimu5g02867 625 NCBIfam tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase 54 487 IPR006466 GO:0035598|GO:0035600
Vimu5g02867 625 SFLD B12-binding domain containing 164 411 - -
Vimu5g02867 625 ProSiteProfiles Radical SAM core domain profile. 193 426 IPR007197 GO:0003824|GO:0051536
Vimu5g02867 625 Gene3D - 53 184 IPR038135 -
Vimu5g02867 625 Gene3D tm_1862 like domain 195 425 IPR023404 -
Vimu5g02867 625 FunFam threonylcarbamoyladenosine tRNA methylthiotransferase isoform X2 197 427 - -
Vimu5g02867 625 Pfam Radical SAM superfamily 204 376 IPR007197 GO:0003824|GO:0051536
Vimu5g02867 625 SFLD Radical SAM 164 411 IPR007197 GO:0003824|GO:0051536
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02867 K15865 - gmx:100798865 1046.96