Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02866 ATGAACATGCTGGTGGTAGAGGTTGTGGATGCAAGCGACCTCATGCCCAAAGACGGGGAAGGCTCAGCCAACCCCTTTGTGGAGGTGAAGTTTGATGAGCAGCAGCACACTACTGAGACAAAGCACAAAGACCTCAATCCTTATTGGAACCAGAAGCTGGTGTTCCACATCGATAACCCGAGAGATCTTGCGTACAAGACAATTGAAGTGGTTGTATACAATCGCAATGATCGGAACCACAACAATTTCCTTGGAAGGGTCAGACTTTCCGGCTCTTCCATCCCTCTGTCGGAGTCCCAGGCCCGTGTTGAACGCTACCCACTTGAGAAACGTGGCCTCTTTTCAAACATCAGGGGCGATATTGCTCTCAAGTGTTATGCGCTGCATGATCCTCTTCCTTCTCATCCTCCCCCACAACCTCAGGACGCCGGCGGCGATCCTGCTGCTGCTTCTGAACAACATCGCCCTCCTCCCCCTGCCCCGGAGGAGGAGGATCAGCACACTCCCTTGCAAGAAATAAACCCCAACATGGTGGCGGAGGAGGAGAGCGTGATCAGTGAAGGGGAGGAGAAGAAAAAGAAGAAGATGAAAAAGAAAGAAAAGGAAGTGAGGACTTTTCACTCTATACCTGCTGCGGCTGCTGCAGCGAAGGCACAGTTCCAGTCACAGTCCCATGCGGCAGCGGAAACGGTGAGGAGGGCTGACTTCGCAAAGGCTGGACCACCGAACGTGATGTTGATGCAGATCCCAAAGCAAAACCCCGAGTATGGACTGGTGGAGACAAGTCCTCCTCTGGCGGCTCGCTTGCGGTACAGAGGAGGGGACAAGATATCAACCACCTACGACTTGGTGGAACAGATGCATTACTTGTACGTTAATGTTGTAAAGGCAAGGGATCTCCCCGTGATGGATATCACGGGCAGCCTTGATCCTTACGTGGAAGTCAAGCTCGGTAACTACAAGGGCCTCACCAAACACCTCGACAAGAATCAGAACCCCGTTTGGAAGCAAATCTTTGCCTTCTCCAAGGAGAGGTTGCAATCAAATTTGCTTGAAGTGACTGTGAAGGACAAGGACATTGGCAAAGATGATTTTGTTGGGAGAGTTCTGTTTGATCTGACTGAGGTTCCTCTTCGGGTGCCCCCAGACAGCCCCTTGGCTCCTCAGTGGTACAGATTGGAGGACAAGAAGGGCCAAAAAATTCACAACAATGGCGAAATCATGCTTGCCGTTTGGATGGGAACACAGGCCGACGAGTCCTTCCCGGAGGCGTGGCACTCCGACGCTCACAACGTCAGCCACTCGAACCTTGCAAACACCCGCTCAAAGGTATATTTCTCACCCAAGCTTTTCTATCTTAGAGTTCAAGTCATCGAAGCTCAGGATCTTGTTCCTTCCGATAAAGGAAGAGCCCCGGACGCTGTTGTTAGAGTACAGCTCGGGAACCAGATGAGATTCACCCGTCCTTCTCAGATGAGAAGCACCAACCCAGTTTGGAACGACGAGCTCATGTTTGTGGCTGCCGAGCCATTTGAGGATTTCATCATTGTGACTGTGGAGGACAAAGTAGGTCCTAGTGTTGAAATATTGGGAAGGGAGATCATATCAGTTAGAAGTGTTCCACCCAGACACGAGACCAGCAAGCTCCCTGATTCTCGTTGGTTCAATTTGCACAGGCCCAGTGCTGTCGGTGAGGAAGAAACGGAGAAAAAGAAGGAGAAATTCTCGAGCAAGATTCACCTAAGAATGTGTCTGGAGGCCGGGTACCATGTGCTGGATGAGTCCACGCATTTCAGCAGTGATCTTCAGCCATCCTCCAAACATCTGAGGAAGAAAAACATTGGCATCCTCGAACTCGGGATACTGAGTGCCCGCAATTTGGTGCCCCTGAAGGCAAGGGAAGGTAGGTCAACTGATGCTTACTGCGTGGCCAAGTATGGCAACAAATGGGTTCGAACCAGAACTCTGCTTGACACTCTGTCCCCTCGATGGAATGAGCAATATACGTGGGAGGTTTATGATCCATGCACTGTCATCACAATTGGGGTTTTTGATAACCACCACATCAATGGGAGCAGTGATTCAAAAGATCAGAGAATTGGAAAGGTGAGAATCCGATTATCAACTCTGGAAACTGATAAGGTGTATACTCATTTTTATCCTCTGCTGGTCCTCCAACCCAATGGCCTGAAGAAGAACGGAGAGCTTCACTTGGCCGTGAGATTCACATGCACCGCTTGGGTGAATATGGTAGCCCAGTATGGCAGGCCTTTGCTTCCCAAAATGCATTATGTCCAACCCATACCTGTGAGGCACATAGACTGGCTCCGCCACCAGGCCATGCAGATTGTGGCAGCTCGCCTATCCAGAGCTGAGCCACCCCTTAGGCGTGAAACAGTTGAGTATATGCTGGACGTGGATTACCATATGTGGAGTCTAAGGAGAAGCAAAGCCAATTTTCACCGCATAATGTCAATCCTCAGAGGAGTTACAGCAGTTTGCAAATGGTTTGATGACATCTGCACCTGGAGAAACCCAATCACAACCTGTCTTGTTCACGTCCTGTTCTTGATACTGGTTTGCTACCCGGAACTGATATTGCCCACCATTTTCCTTTACTTGTTTGTAATTGGGATTTGGAATTACCGGTTCAGGCCAAGGCAACCACCCCACATGGATGCCAGGTTGTCACAGGCAGAAACTGCCCACCCAGATGAACTGGACGAGGAATTTGACACTTTTCCATCCACAAAACCTTCAGATATTGTGAGAATGAGGTATGACAGATTGCGGAGTGTGGCGGGTAGAGTACAGACTGTGGTTGGAGATCTGGCTACTCAGGGAGAAAGAGCTCAAGCCATACTAAATTGGAGAGACTCGCGGGCAACATCTATCTTTATCATCTTCTCGTTGATATGGGCCGTATTCATTTACATTACTCCCTTTCAGGTGGTGGCAATTCTCGTAGGCCTATATATGCTACGTCATCCTCGGTTTAGGAGCAAGATGCCTTCAGTACCAATCAATTTCTTCAAGAGATTGCCTTCCAGATCAGACACGCTTATATGA 3069 0.4953 MNMLVVEVVDASDLMPKDGEGSANPFVEVKFDEQQHTTETKHKDLNPYWNQKLVFHIDNPRDLAYKTIEVVVYNRNDRNHNNFLGRVRLSGSSIPLSESQARVERYPLEKRGLFSNIRGDIALKCYALHDPLPSHPPPQPQDAGGDPAAASEQHRPPPPAPEEEDQHTPLQEINPNMVAEEESVISEGEEKKKKKMKKKEKEVRTFHSIPAAAAAAKAQFQSQSHAAAETVRRADFAKAGPPNVMLMQIPKQNPEYGLVETSPPLAARLRYRGGDKISTTYDLVEQMHYLYVNVVKARDLPVMDITGSLDPYVEVKLGNYKGLTKHLDKNQNPVWKQIFAFSKERLQSNLLEVTVKDKDIGKDDFVGRVLFDLTEVPLRVPPDSPLAPQWYRLEDKKGQKIHNNGEIMLAVWMGTQADESFPEAWHSDAHNVSHSNLANTRSKVYFSPKLFYLRVQVIEAQDLVPSDKGRAPDAVVRVQLGNQMRFTRPSQMRSTNPVWNDELMFVAAEPFEDFIIVTVEDKVGPSVEILGREIISVRSVPPRHETSKLPDSRWFNLHRPSAVGEEETEKKKEKFSSKIHLRMCLEAGYHVLDESTHFSSDLQPSSKHLRKKNIGILELGILSARNLVPLKAREGRSTDAYCVAKYGNKWVRTRTLLDTLSPRWNEQYTWEVYDPCTVITIGVFDNHHINGSSDSKDQRIGKVRIRLSTLETDKVYTHFYPLLVLQPNGLKKNGELHLAVRFTCTAWVNMVAQYGRPLLPKMHYVQPIPVRHIDWLRHQAMQIVAARLSRAEPPLRRETVEYMLDVDYHMWSLRRSKANFHRIMSILRGVTAVCKWFDDICTWRNPITTCLVHVLFLILVCYPELILPTIFLYLFVIGIWNYRFRPRQPPHMDARLSQAETAHPDELDEEFDTFPSTKPSDIVRMRYDRLRSVAGRVQTVVGDLATQGERAQAILNWRDSRATSIFIIFSLIWAVFIYITPFQVVAILVGLYMLRHPRFRSKMPSVPINFFKRLPSRSDTLI 1022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02866 1022 Pfam Plant phosphoribosyltransferase C-terminal 867 1021 IPR013583 -
Vimu5g02866 1022 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 289 429 IPR035892 -
Vimu5g02866 1022 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 452 606 IPR035892 -
Vimu5g02866 1022 ProSiteProfiles C2 domain profile. 431 555 IPR000008 -
Vimu5g02866 1022 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 3 140 IPR035892 -
Vimu5g02866 1022 SMART C2_3c 452 549 IPR000008 -
Vimu5g02866 1022 SMART C2_3c 289 385 IPR000008 -
Vimu5g02866 1022 SMART C2_3c 616 719 IPR000008 -
Vimu5g02866 1022 SMART C2_3c 3 108 IPR000008 -
Vimu5g02866 1022 ProSiteProfiles C2 domain profile. 598 720 IPR000008 -
Vimu5g02866 1022 Gene3D C2 domain 276 412 IPR035892 -
Vimu5g02866 1022 Gene3D C2 domain 434 585 IPR035892 -
Vimu5g02866 1022 CDD C2C_MCTP_PRT_plant 452 604 IPR047258 -
Vimu5g02866 1022 ProSiteProfiles C2 domain profile. 1 110 IPR000008 -
Vimu5g02866 1022 MobiDBLite consensus disorder prediction 184 203 - -
Vimu5g02866 1022 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 615 748 IPR035892 -
Vimu5g02866 1022 Gene3D C2 domain 591 744 IPR035892 -
Vimu5g02866 1022 Gene3D C2 domain 1 130 IPR035892 -
Vimu5g02866 1022 CDD C2D_MCTP_PRT_plant 616 739 IPR047255 -
Vimu5g02866 1022 CDD C2B_MCTP_PRT_plant 289 415 IPR047257 -
Vimu5g02866 1022 FunFam C2 domain-containing protein 284 430 - -
Vimu5g02866 1022 MobiDBLite consensus disorder prediction 129 203 - -
Vimu5g02866 1022 Pfam C2 domain 615 722 IPR000008 -
Vimu5g02866 1022 Pfam C2 domain 4 104 IPR000008 -
Vimu5g02866 1022 Pfam C2 domain 452 557 IPR000008 -
Vimu5g02866 1022 Pfam C2 domain 289 391 IPR000008 -
Vimu5g02866 1022 ProSiteProfiles C2 domain profile. 271 391 IPR000008 -
Vimu5g02866 1022 PANTHER PHOSPHORIBOSYLANTHRANILATE TRANSFERASE ISOFORM 1 4 1021 IPR047259 -
Vimu5g02866 1022 FunFam C2 domain-containing protein 598 746 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02866 Vimu-Chr5 37813963 37821527 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02866 1 1022 Lipid Metabolism Gene Families AT1G22610 71.851 0.0 1498
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02866 - - gmx:100778133 1795.4