Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02862 ATGGCCCAAGAAACCCAAAACCCACCTCCCCCTCAGGAAGTGCCGCCCGTTGTGGACCCTGTCCCTCTCGACAACGCACCTACCACCGAACCTCAACCCGAACCTCAACCTGAACCTGAAACTGAAACCCAGGAGAAGGTCCAGGCCGCTGTTGAAGACAAGATTTCTGAATCGGTTTCGTTCAAGGAGGAGACCAACGTCGTCGGCGATCTCCCCGAGGCGCAGAAGAAAGCCCTTGATGAACTCAAGAAGCTTGTTCAAGAAGCGCTCAACAAGCGTGAGCTAACCGCGCCCAAGCCCCCCGCGCCAGAGCCAGAGAAGAAGAAACCAGACACCGCCAAGGAGCCTGAAGTGGCAGCAGGAGAAGCAGAGAAGAAGGAGCCGGAAGGGGCCGCAGAAGAAGCGAAGAAGGAAGTTGAATTGACGGAAGAGAAGAAGGAGATTGAAGTTAAAGAAGAGACGAAAGAAGTAGAAGTGACTGAAGAGAAGAAGGATGTTGAAGTGACAGAAGAGAAGAAGGATGTTGAAGTAACAGAAGAGAAGAAGGATGTTGAAGTTAAAGAAGAGAAGAAGGAAATAGAAGTAACGGAAGAGAAGAAGGAAGTACAAGTGACAGAAGAGAAGAAGGATGTACAAGTGACAGAAGAGAAGAAGGAAGTAGAAGTGACGGAAGAGAAGAAGGAAGTAGAAGTGACAGAAGAGAAGAAGGAAGTAGAAGTAACAGAAGAGAAGAAGGAAGAAGAGGTGAAAGAAGAAGAGAAGGAGGTGGTTGAAGCGACAGAAGCGAAGGAGGCGGAAGAGGAACTTGGTCCGGAGGAAGTTGAGATATGGGGAATTCCGCTGCTGGCGGATGAGAGGAGCGATGTGATTCTGCTAAAGTTTCTGAGAGCGAGGGATTTCAAGGTAAAGGATGCCTTCAGCATGCTCAAGAACACCGTGCGTTGGAGGAAGGAATTCGGAATCGACGCTCTGGTCCTGGAAGATTTCGGAACTGATTGGGACAAGGTGGTGTTCACTGAGGGACACGACAAACAAGGACACCCCGTGAATTACAACGTCTTTGGTGAGTTCGAGAATAAGGAGTTGTACAACAAGACCTTTGCGGACGAGGAGAAGCGCAACAAGTTCATCAGGTGGAGGATTCAGGTGCTGGAGAAGAGCGTGAGAAGCCTTGACTTCTCTCCCACTGCCATCTCCACTATTGTGCAGGTCAACGACCTCAAGAACTCTCCGGGACTCGGCAAGAGTAACCTCAGGCAGGCCACCAATCAGGCCCTTCAATTGCTTCAGGATAACTACCCTGAGTTTGTGGCCAAGCAGATATTTATCAATGTTCCCTGGTGGTACCTTGCCTTTTCTAGGATGATCAGTCCGTTCTTCACACAGAGGACCAAGAGCAAATTTGTGTTTGCTGGGCCATCCAAGTCTGCCGAAACCCTTTTCAAATATATTGCTCCGGAGCTGGTGCCCATTCAATACGGTGGACTGAGCAGAGAGGGTGAACAGGAATTCACCACTTCTGGTCCTGTTACGGAGGTCACAATCAAACCCACAACCAAACATGCTGTCGAGTTCCCAGTTTCCGAGAAAAGCCACCTGGTTTGGGAAATCCGAGTGGTGGGTTGGGATGTGAGCTACGGAGCTGAATTTGTGCCCAGCACTGAGGATGGATACACTGTCATTGTGCAGAAGAACAGGAAAATTGCTCCTGCAGATGAGACCGTGATCAGTAACGGTTTCAAAATTGGTGAAGCTGGCAAGGTAGTACTCACCATAGACAACCAAACATCCAAGAAGAAGAAACTTCTCTACAGGTCAAAGACCAAAGCCATCGCAGAGTGA 1842 0.4946 MAQETQNPPPPQEVPPVVDPVPLDNAPTTEPQPEPQPEPETETQEKVQAAVEDKISESVSFKEETNVVGDLPEAQKKALDELKKLVQEALNKRELTAPKPPAPEPEKKKPDTAKEPEVAAGEAEKKEPEGAAEEAKKEVELTEEKKEIEVKEETKEVEVTEEKKDVEVTEEKKDVEVTEEKKDVEVKEEKKEIEVTEEKKEVQVTEEKKDVQVTEEKKEVEVTEEKKEVEVTEEKKEVEVTEEKKEEEVKEEEKEVVEATEAKEAEEELGPEEVEIWGIPLLADERSDVILLKFLRARDFKVKDAFSMLKNTVRWRKEFGIDALVLEDFGTDWDKVVFTEGHDKQGHPVNYNVFGEFENKELYNKTFADEEKRNKFIRWRIQVLEKSVRSLDFSPTAISTIVQVNDLKNSPGLGKSNLRQATNQALQLLQDNYPEFVAKQIFINVPWWYLAFSRMISPFFTQRTKSKFVFAGPSKSAETLFKYIAPELVPIQYGGLSREGEQEFTTSGPVTEVTIKPTTKHAVEFPVSEKSHLVWEIRVVGWDVSYGAEFVPSTEDGYTVIVQKNRKIAPADETVISNGFKIGEAGKVVLTIDNQTSKKKKLLYRSKTKAIAE 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02862 613 SUPERFAMILY CRAL/TRIO N-terminal domain 62 327 IPR036273 -
Vimu5g02862 613 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 326 501 IPR001251 -
Vimu5g02862 613 MobiDBLite consensus disorder prediction 8 38 - -
Vimu5g02862 613 ProSiteProfiles GOLD domain profile. 501 608 IPR009038 -
Vimu5g02862 613 MobiDBLite consensus disorder prediction 1 73 - -
Vimu5g02862 613 MobiDBLite consensus disorder prediction 242 264 - -
Vimu5g02862 613 Gene3D - 233 526 IPR036865 -
Vimu5g02862 613 MobiDBLite consensus disorder prediction 242 269 - -
Vimu5g02862 613 Coils Coil 215 269 - -
Vimu5g02862 613 CDD SEC14 332 496 IPR001251 -
Vimu5g02862 613 MobiDBLite consensus disorder prediction 99 216 - -
Vimu5g02862 613 MobiDBLite consensus disorder prediction 39 60 - -
Vimu5g02862 613 SUPERFAMILY Supernatant protein factor (SPF), C-terminal domain 512 604 IPR036598 -
Vimu5g02862 613 PANTHER PATELLIN-1 191 610 IPR044834 GO:0008289
Vimu5g02862 613 Coils Coil 179 208 - -
Vimu5g02862 613 SMART CRAL_TRIO_N_2 287 312 IPR011074 -
Vimu5g02862 613 Pfam CRAL/TRIO domain 335 495 IPR001251 -
Vimu5g02862 613 Coils Coil 132 163 - -
Vimu5g02862 613 SMART sec14_4 330 498 IPR001251 -
Vimu5g02862 613 PRINTS Cellular retinaldehyde-binding protein signature 487 496 - -
Vimu5g02862 613 PRINTS Cellular retinaldehyde-binding protein signature 290 312 - -
Vimu5g02862 613 MobiDBLite consensus disorder prediction 90 216 - -
Vimu5g02862 613 SUPERFAMILY CRAL/TRIO domain 337 497 IPR036865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02862 Vimu-Chr5 37797546 37799653 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02862 291 490 Acyl Lipid Metabolism Gene Families AT1G55840 28.111 2.91e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02862 K19996 - gmx:100806382 615.15