Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02861 ATGGCCGAAAATGATTCTAACCCTCCTCCCCCTCCTCCTCCAGCCGCTTCACCGCCTCAGGAGCCTCCTGTGCCACCGTCACTATCATCGGAGAATGATGCCAAAGTTGACGATGTGGTTGAAGAGAAGGTGAAAGCTGAGGACGTGCTAGTGGCTGAAGAGAAAGACAAAGAGAAAGATGAAGTAAAAGGAGTTGAGGAGGCGGTTGTGGTTGAAGAGAAGGAGAAGGAGGAGGAGAAGGAGGAAGAGAAAGAGAAAGAGAAAGAGAAAGAGAAAGAAGAAGAGGTTACAGTAGGAGAGACAGAGAGCGAGTCGTTGAAGGAGGAGAGCAATAGGGTTTCTGATTCGGAAAGAAAGGGCATCGAGGAGCTGAAGAAGGTGGTGAGGGAGGAGTTGGAGCGGAAGGAGGAAGGCGAAGTATCCATCTGGGGCGTCCCTCTCTTTAAGGACCAGAGGACTGACGTCATTCTTCTGAAGTTCCTGAGAGCGCGAGACTTGAGGGTGAATGATGCTCTTGTGATGATTCAGAACACTCTCCGATGGAGAAAGGAGTTCGGCATCGATGCGCTTTTGGAGGAAGATCTGGGAGAGGAGTTGGAGAAGGTGGTCTTCATGCACGGCCACGGAAGAGAGGGCCATCCCGTCTGTTACAACGTCTACGGAGAGTTCCAAAACAAGGAGCTGTACCAAAAGGCTTTCTCCACCGAGGAAAACCGAACCAAGTTTCTCCGATGGCGTATTCAGCTGCTGGAGCGCAGCATCAGGAACCTGGACTTCACTCCTGAAGGCATCAACACCATCTTCCAAGTCAATGACCTCAAAAACTCTCCTGGCCCTGCCAAACGGGAACTTCGCCTTGCCACCAAACAAGCTTTGCAGTTGCTTCAGGACAACTATCCCGAGTTCGTTGCCAAACAGGTCTTCATCAATGCCCCTTGGTGGTATCTTGCATTCAATACCATGATCAGTCCCTTCTTGACTCAGAGAACCAAAAGCAAATTTATCTTTGCTGGACCATCCAAGTCTCCCGATACTCTTTTCAAGTATATTTCTCCTGAGCAAGTGCCGGTTCAGTATGGTGGCCTCAGTGTAGACTTCTGCGACTGCAACCCCGATTTCACCATGTCTGATCCTGTCACCGAAATTCCTATAAAGCCAACCACTAAGCAAACTGTCGAAATTGCTATCTATGAGAAATGCATTATCGTTTGGGAGCTGCGGGTGGTGGGCTGGGAGGTTACCTATAACGCTGAATTCAAGCCTGATGCTAAAGATGCATATACAGTTGTCATACAGAAGGCCACAAAGATGTCCCCCACCGATGAACCAGTGGTTTCCAACAGCTTCAAAGTTGGTGAACTGGGGAAGTTGTTGCTCACCATAGACAATCCTACCTTGAAAAAGAAGAGGCTTCTTTACAGGTTCAATATCAAACCCTACTGTGATTGA 1449 0.4893 MAENDSNPPPPPPPAASPPQEPPVPPSLSSENDAKVDDVVEEKVKAEDVLVAEEKDKEKDEVKGVEEAVVVEEKEKEEEKEEEKEKEKEKEKEEEVTVGETESESLKEESNRVSDSERKGIEELKKVVREELERKEEGEVSIWGVPLFKDQRTDVILLKFLRARDLRVNDALVMIQNTLRWRKEFGIDALLEEDLGEELEKVVFMHGHGREGHPVCYNVYGEFQNKELYQKAFSTEENRTKFLRWRIQLLERSIRNLDFTPEGINTIFQVNDLKNSPGPAKRELRLATKQALQLLQDNYPEFVAKQVFINAPWWYLAFNTMISPFLTQRTKSKFIFAGPSKSPDTLFKYISPEQVPVQYGGLSVDFCDCNPDFTMSDPVTEIPIKPTTKQTVEIAIYEKCIIVWELRVVGWEVTYNAEFKPDAKDAYTVVIQKATKMSPTDEPVVSNSFKVGELGKLLLTIDNPTLKKKRLLYRFNIKPYCD 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02861 482 SUPERFAMILY CRAL/TRIO N-terminal domain 96 194 IPR036273 -
Vimu5g02861 482 CDD SEC14 201 362 IPR001251 -
Vimu5g02861 482 MobiDBLite consensus disorder prediction 34 115 - -
Vimu5g02861 482 Pfam CRAL/TRIO, N-terminal domain 128 177 IPR011074 -
Vimu5g02861 482 Gene3D - 106 397 IPR036865 -
Vimu5g02861 482 SMART sec14_4 197 364 IPR001251 -
Vimu5g02861 482 MobiDBLite consensus disorder prediction 1 115 - -
Vimu5g02861 482 MobiDBLite consensus disorder prediction 1 26 - -
Vimu5g02861 482 Coils Coil 55 97 - -
Vimu5g02861 482 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 192 361 IPR001251 -
Vimu5g02861 482 PANTHER PATELLIN-1 70 479 IPR044834 GO:0008289
Vimu5g02861 482 SUPERFAMILY CRAL/TRIO domain 202 371 IPR036865 -
Vimu5g02861 482 SMART CRAL_TRIO_N_2 153 178 IPR011074 -
Vimu5g02861 482 ProSiteProfiles GOLD domain profile. 372 477 IPR009038 -
Vimu5g02861 482 Pfam CRAL/TRIO domain 201 361 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02861 Vimu-Chr5 37791624 37793387 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02861 157 356 Acyl Lipid Metabolism Gene Families AT1G55840 29.167 3.25e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02861 - - gmx:100804006 674.47