Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02854 ATGAGTTGCTCTTCCGGAACAGTATTATCAGTATGTGCATCACTCTCTTCTCCCCTGCCTCAGTCTCGCACGCCCAATCCCAATTCCAATTCGCTTTCGTTTTCATGGCTTTCTTCATTTCCTTCATTAACTTTAAGTGCATCTCGCTCCGCTAAAAACCCTCCAAATCCCTCACGCTCCCAGGATTCTTTCATTCGAGCTGCCTATACCCGAAGATCTCGTGGTGAAGCTGCAAAGAAGCCGAGCAGGAAATCATGGAAGCAAAGGACAGATATGTACATGAGACCATTCTTGTTAAATGTTTTCTTCTCAAAAAGATTTATTCATGCTAAAGTGGTACACCGTGGAACGAGCAAAGTCATATGTGTTGCTACCACAAACGCCAAGGATCTTCGAAACTCCCTTCCATCCTTGATAGATCATAACGCATGTAGAGTAGTTGGAAGGCTTATTGCCGAGCGATCAATGGAAGCTGATGTATTTGCAGTGGCGTATGAACCCAGAAAGGATGAAAGAATTGAAGGTAGACTAGGCATCGTTCTTGATACAATTAAGGAAAACGGAATTATTTTTATTTGA 579 0.4283 MSCSSGTVLSVCASLSSPLPQSRTPNPNSNSLSFSWLSSFPSLTLSASRSAKNPPNPSRSQDSFIRAAYTRRSRGEAAKKPSRKSWKQRTDMYMRPFLLNVFFSKRFIHAKVVHRGTSKVICVATTNAKDLRNSLPSLIDHNACRVVGRLIAERSMEADVFAVAYEPRKDERIEGRLGIVLDTIKENGIIFI 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02854 192 CDD Ribosomal_L18_L5e 86 189 - -
Vimu5g02854 192 PANTHER 39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL 67 191 IPR005484 GO:0003735|GO:0005840|GO:0006412
Vimu5g02854 192 Pfam Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast 94 191 IPR005484 GO:0003735|GO:0005840|GO:0006412
Vimu5g02854 192 Gene3D Ribosomal protein S11 56 192 IPR036967 GO:0003735|GO:0005840|GO:0006412
Vimu5g02854 192 FunFam 50S ribosomal protein L18 60 192 - -
Vimu5g02854 192 SUPERFAMILY Translational machinery components 87 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02854 Vimu-Chr5 37751035 37752150 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02854 K02881 - gmx:100803727 310.457