Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02827 ATGTATACCACAAACAATCCTAATTTGGTTGTGGCACAAGTGGGCGAACCAAACGCCGACCATGACTGTTGGGAGAGACCAGAAGACATGGACACTCCTCGAACCTCGTACTATCTCACTAAAGAGAAACCAGGTTCAGAACTGTCTGCTGAGATTGCAGCTGCACTTGCAGCATCTTCGATCGCATTTAGGACAACCCATGCTTCCTATTCCAACATTCTTCTCAAAAGAGCTATCCGGGATGACTTGGCTTGGGGAGCAGCATGGTTGTATAAAGCCACAAAAAAGCCCAGTTATTGGGATTTTGTAAAATCAAACATTCAAGCAGCGAACGTTGATCCTTTCGAATTTGGATGGGATGCCAAAGTGGCTGGGATAAATGTTCTTGTTTCCGAGGCTAGTTGTCTTAATTTCATGAATTTTTTTCGTTGTAGTAAATTCATGCATGTTTTGATTCAGATGATTTCAAAAAATTGA 477 0.4214 MYTTNNPNLVVAQVGEPNADHDCWERPEDMDTPRTSYYLTKEKPGSELSAEIAAALAASSIAFRTTHASYSNILLKRAIRDDLAWGAAWLYKATKKPSYWDFVKSNIQAANVDPFEFGWDAKVAGINVLVSEASCLNFMNFFRCSKFMHVLIQMISKN 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02827 158 PANTHER ENDO-1,4-BETA-GLUCANASE 79 135 - -
Vimu5g02827 158 SUPERFAMILY Six-hairpin glycosidases 4 135 IPR008928 GO:0005975
Vimu5g02827 158 Gene3D - 1 78 IPR012341 GO:0005975
Vimu5g02827 158 Gene3D - 79 154 IPR012341 GO:0005975
Vimu5g02827 158 Pfam Glycosyl hydrolase family 9 80 134 IPR001701 GO:0004553|GO:0005975
Vimu5g02827 158 Pfam Glycosyl hydrolase family 9 5 79 IPR001701 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02827 Vimu-Chr5 37587151 37588426 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02827 7 132 Glycoside Hydrolase AT4G39010 44.099 2.18e-39 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02827 K01179 - zju:107414337 152.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02827 5 37587151 37588426 Vimu5g02827 5 37587151 37588426 ECH