Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02822 ATGGGTTTTCCGCAAAGGTTAAGGTTAGTGTTCATGCTGTTATTGATGAGTTGTGTAAATGTAAGAGGTTTGCAGCATAATTATGGAGAGGCCTTGTCAAAGAGCATATTATTCTTTGAAGGGCAGAGATCAGGGAAGCTTCCACCAACACAGAGAATGACTTGGAGGAAGGATTCTGCACTTCATGATCTCTATCTTCTCCCTCCAGATACTACTACAAAGGTTGACTTGGTTGGGGGATACTACGATGCTGGTGACAACGTGAAATTCAACTTTCCAATGGCATTTTCAACGACGATGCTGGCGTGGAGTGTAATAGAGTTCGGAAAATTCATGGGTCCAGATCTTAAACACGCGCTGGACGCTATTCGTTGGGGCTCGGAGTATTTTCTGAAAGCCACGAGCATCCCTGGAATAGTGTTTGCACAAGTTGGTGACCCTTATGCTGATCATAACTGCTGGGAGAGACCTGAAGACATGGACACCCCCAGAACAGCCTACGCCGTTAGCAGGGACCACCCTGGCTCTGAAGTCTCTGCAGAGATTGCAGCAGCACTTGCAGCTTCTTCTATTGTCTTCAGAAAATATCACATTGGTTATTCTGCAAGGCTTCTGCAAAGGGCCATAATGGTTTTCGACTTTGCTGATAAATATAGAGGATCATACAACGACAGCCTTGGACCGTGGGTGTGCCCATTCTATTGTGATTTTGGTGGCTACCAGGACGAATTGGTGTGGGGAGCAGCATGGTTGTTGAAGGCTACTAAACGCCCTTATTACTTTGATTACATTGATCAAAACATTCATAATCTGAAAAGCTTCGCTGAATTTGGATGGGACACAAAGGACGCTGGCATCAACGTGCTCCTTTCGAAGCTTCTAATCAATAGCAGCTCAAATTCTAAGCCTTTCGTATTCAATGCGGACAAGTTTGTCTGTAGTGTGCTGCCTGAATCACCTTCGGTATCAGTCAAATACTCTCCAGGTGGGCTTCTGTTCAAGCCTGGGGGAAGTAACTTACAGCATACAACAGCAATCTCATTCCTGTTTCTGGTTTATGCTGGCTATTTGAAGAAGACAAATAAAGAGATTGACTGTGGTGGTAACGTTTTTGCTTCTCGAACCCGACTTAGACAAATAGCAAGAGGCCAGGTGGATTACATACTAGGAAGCAATCCACTGAATATGTCATACATGGTAGGATACGGAGCGAAATACCCTGAAAAAATACATCATCGTGCGTCGTCGTTGCCATCAGTGGATGATTACCCTCCTCGTATTGCTTGCAAAGAAGGATCTTTTTACTTTGAAAGCCAAAATCCAAACCCCAATTTGCTCTCAGGAGCTGTCGTTGGAGGACCTTATCCTAACGATTCGTACGCAGATTCTCGAGCAGATTTTGTACACTCCGAACCGACAACATACATCAATGCACCCCTTGTCGGTGTTTTGGCTTACTTCAACTCACATTCATTCTAA 1479 0.4462 MGFPQRLRLVFMLLLMSCVNVRGLQHNYGEALSKSILFFEGQRSGKLPPTQRMTWRKDSALHDLYLLPPDTTTKVDLVGGYYDAGDNVKFNFPMAFSTTMLAWSVIEFGKFMGPDLKHALDAIRWGSEYFLKATSIPGIVFAQVGDPYADHNCWERPEDMDTPRTAYAVSRDHPGSEVSAEIAAALAASSIVFRKYHIGYSARLLQRAIMVFDFADKYRGSYNDSLGPWVCPFYCDFGGYQDELVWGAAWLLKATKRPYYFDYIDQNIHNLKSFAEFGWDTKDAGINVLLSKLLINSSSNSKPFVFNADKFVCSVLPESPSVSVKYSPGGLLFKPGGSNLQHTTAISFLFLVYAGYLKKTNKEIDCGGNVFASRTRLRQIARGQVDYILGSNPLNMSYMVGYGAKYPEKIHHRASSLPSVDDYPPRIACKEGSFYFESQNPNPNLLSGAVVGGPYPNDSYADSRADFVHSEPTTYINAPLVGVLAYFNSHSF 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02822 492 PANTHER ENDO-1,4-BETA-GLUCANASE 10 489 - -
Vimu5g02822 492 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 460 478 IPR033126 -
Vimu5g02822 492 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 387 413 IPR018221 -
Vimu5g02822 492 FunFam Endoglucanase 24 492 - -
Vimu5g02822 492 Gene3D - 24 491 IPR012341 GO:0005975
Vimu5g02822 492 SUPERFAMILY Six-hairpin glycosidases 10 489 IPR008928 GO:0005975
Vimu5g02822 492 Pfam Glycosyl hydrolase family 9 28 484 IPR001701 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02822 Vimu-Chr5 37568785 37570649 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02822 9 490 Glycoside Hydrolase AT1G23210 60.494 0.0 580
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02822 K01179 - gmx:100775752 857.055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02822 5 37568785 37570649 Vimu5g02822 5 37568785 37570649 ECH