Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02818 ATGAACACTGATCCAAAAACTCCATTGCTGAGTCCTCCAAGTTCTCTAACAAGGAAAAATGAGGGAAGAACACAAAAGGGTGTCCTTATTTTCGTTGTTTCCATCGTTTTTCTCATGTCATTGGCTGCACTTGTCATAAGCCTCCATAGCCATAACATCCAACCTTTACTAAGTATTATCCAGAGGCCTCTAACGATCGAGATCGACTTAAGGTCTCTACCCGATAGCAGCTCCCTCCCATTACAGCCTCGAGGAATTGCAGAAGGTGTTTCAGCAAAGTCAAATCCATATCTATGGCAGATAGGTTCATATAACTGGACAAACGCCATGTTATCGTGGCAAAGAACAGCTTTTCATTTTCAACCTCAGAAGAACTGGATGAACGATCCTAACGGTCCATTGTTATACAAGGGGTGGTACCATTTGTTTTACCAATACAATCCTGATTCAGCTCTGTTTGCAAACATAACGTGGGGCCACGCCGTATCAAGGGACTTGATTCACTGGTTCTACCTTCCCATTGCGATGCTTCGAGATTCCTGGTACGATATCAATGGTGTATGGTCAGGATCGGCCACTCTTTTGCCAGATGGCAAAATCGTCATGCTCTACACCGGTAGCACCCATCAGAACGTGCAAGTCCAAAATCTTGCGTACCCCGCCAACCTATCTGATCCGCTTCTCATTCATTGGGTCAAGTACGCTGATAACCCGCTCTTGGAGCCTCCACCGGGAATTGGGCCAAAGGATTTTCGTGACCCAACCACTGCGTGGATTGGGCCTGATGGCAAATGGAGGATCGCTATTGGGTCAAAGGTCAACCAGACAGGTCTTTCGTTGGTGTATAAAACCCAGGATTTTATCCACTACGAACTCAATGATCAGTACATGCATGAAGTCCCGGGTACGGGTATGTGGGAGTGCGTGGACTTTTACCCGGTTTCGGTAAATGGGTCTGATGGGTTGGATACATCTGCAAATGGGCCAGATGTGAAACATGTGTTGAAGTCTAGTTTGGATGACACTAGGGGGGATCATTATGCTATTGGGACCTACTTCAATGAAAATGATACGTGGGTGCCCGATAACCCGGATGAGGATGTGGGTATCGGGTTGAAGTTGGACTATGGGAGATTCTATGCGTCAAAGTCGTTTTATGACCAAGACAAAAAGAGAAGGGTCCTGTGGGGTTGGATCAACGAATCAGACAGCGAAACCGCTGACCTGAAAAAGGGTTGGGCATCTCTTCAGAGTATTCCAAGAACAGTGGTGTTTGACAATAAAACTAGAGCTCATTTGCTTCAGTGGCCAGTGGAAGAAATAGAGAGCTTAAGGCTTAACAGTTATGAATTTGAAGAAGTCCTGGTTAAGCCGGGCTCAGTTCTGCCATTGGACATAGGCCCTGCCACACAGTTGGACATATTTGTTGAATTTGAAATCGAATATTTAGTATCCAAAGAGACCGAGAAGAAGGAAAATGTAGGGTGTGGAAATGGAGCTTTTGACAGAAGTAGTCTGGGACCATTTGGCATTCTAGCTCTGGCAGATGACCAACTTTCTGAGCTAACACCGATTTATTTCCATCTTTCTAGTACTACCACCAGTTTAACATCTTCCTTCTGTGTTGATGAAACCAGGTCTTCAAAGGCTCCTGATGTTTCAAAACTAGTTTTTGGAAGCGAAGTTCCAGTTGTCAGTGATGAAAGATTATCAATGAGGATATTGGTGGACCATTCAGTCATTGAGAGCTTTGCTCAGGGAGGGAGAACTGTGATATCGTCTAGAGTTTATCCAACAAAAGCAATTTACGAAGCTGCAAGATTGTTTGTGTTCAACAACGCAACAGACATAAACATCAAGGCCTCACTCAAGATTTGGCAATTGAACTCAGCTTTTATACGTCCCTTTCCCTTTGACAAGAAGTTGTGA 1929 0.4463 MNTDPKTPLLSPPSSLTRKNEGRTQKGVLIFVVSIVFLMSLAALVISLHSHNIQPLLSIIQRPLTIEIDLRSLPDSSSLPLQPRGIAEGVSAKSNPYLWQIGSYNWTNAMLSWQRTAFHFQPQKNWMNDPNGPLLYKGWYHLFYQYNPDSALFANITWGHAVSRDLIHWFYLPIAMLRDSWYDINGVWSGSATLLPDGKIVMLYTGSTHQNVQVQNLAYPANLSDPLLIHWVKYADNPLLEPPPGIGPKDFRDPTTAWIGPDGKWRIAIGSKVNQTGLSLVYKTQDFIHYELNDQYMHEVPGTGMWECVDFYPVSVNGSDGLDTSANGPDVKHVLKSSLDDTRGDHYAIGTYFNENDTWVPDNPDEDVGIGLKLDYGRFYASKSFYDQDKKRRVLWGWINESDSETADLKKGWASLQSIPRTVVFDNKTRAHLLQWPVEEIESLRLNSYEFEEVLVKPGSVLPLDIGPATQLDIFVEFEIEYLVSKETEKKENVGCGNGAFDRSSLGPFGILALADDQLSELTPIYFHLSSTTTSLTSSFCVDETRSSKAPDVSKLVFGSEVPVVSDERLSMRILVDHSVIESFAQGGRTVISSRVYPTKAIYEAARLFVFNNATDINIKASLKIWQLNSAFIRPFPFDKKL 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02818 642 MobiDBLite consensus disorder prediction 1 20 - -
Vimu5g02818 642 SUPERFAMILY Arabinanase/levansucrase/invertase 112 438 IPR023296 -
Vimu5g02818 642 SUPERFAMILY Concanavalin A-like lectins/glucanases 437 632 IPR013320 -
Vimu5g02818 642 Pfam Beta-fructofuranosidase, N-terminal domain 9 111 IPR021792 GO:0004564
Vimu5g02818 642 Gene3D Glycosyl hydrolase domain; family 43 123 448 IPR023296 -
Vimu5g02818 642 Pfam Glycosyl hydrolases family 32 C terminal 440 627 IPR013189 -
Vimu5g02818 642 FunFam Beta-fructofuranosidase, insoluble isoenzyme CWINV1 123 449 - -
Vimu5g02818 642 Gene3D - 449 628 - -
Vimu5g02818 642 CDD GH32_Fruct1-like 125 423 - -
Vimu5g02818 642 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV1-RELATED 56 631 - -
Vimu5g02818 642 ProSitePatterns Glycosyl hydrolases family 32 active site. 119 132 IPR018053 GO:0004553|GO:0005975
Vimu5g02818 642 SMART glyco_32 119 588 IPR001362 GO:0004553|GO:0005975
Vimu5g02818 642 Pfam Glycosyl hydrolases family 32 N-terminal domain 119 437 IPR013148 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02818 Vimu-Chr5 37542054 37545047 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02818 81 636 Glycoside Hydrolase AT1G12240 61.419 0.0 735
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02818 K01193 - gmx:100814788 1020.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02818 5 37542054 37545047 Vimu5g02818 5 37542054 37545047 ECH