Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02813 ATGGTGAGTGAGTGGACTCGGGAATGGTTGGGTTTAAAGAAAGAGGGGAATGGAGATGACGACAAAGAAATGAGGGTGATGGAGAGTGCTTTTGCAAGCGCTTCGGCGATTACAGACCAGAGGCAAAAAATAGAGCAGTATAAGAGCATTCTCGCAGCTGTCATTTCCTCTAACGACATTGCTCAGTCTAGGAAATTTATCGATCACATGTTATCAGATGATGTTCCATTAGTAGTGTCGCGGCAGCTTTTGCAGACTTTTGCTCAAGAGTTGGGAAGATTGGAGCCTGAGATACAGAAAGAGATTGCTCATTACACCCTTGCCCAAATTCAGCCTCGTGTTGTGTCGTTCGAAGAGCAGGTTCTAGTTATTAGAGAGAAACTCGCTGAGCTTTATGAATCTGAGAAGCAATGGTCAAAAGCTGCTCAAATGCTCAGTGGTATTGACCTAGATTCAGGAATGAGGGTGATTGATGATGCATTCAGGTTGTCAAAGTGTGTCCAAATTGCTTGTTTATACCTTGAGGACGACGATGCTGTCAATGCTGAGGCTTTTATTAATAAAGCATCATTCTTGGTCAGCAGTAGTCAGCATGAAGTACTCAATTTAAAGTACAAGGTTTGCTATGCTAGGATCTTAGATCTGAAGAGGAAGTTTTTGGAAGCAGCATTACGGTATTATGATATATCTCAAATTGAGAAAAGGAAAATAGGAGACGAGGAGATTAATGAAGAAGCACTTGAGCAAACTTTATCTGCTGCTGTTACATGCACGATATTGGCAGCTGCAGGACCTCAGCGTTCCCGTGTTCTTGCTACTCTGTACAAGGATGAGCGGTGCTCAAAGTTGAAGATCTATCCAATATTGCAGAAGGTGTATTTGGAGAGAATTCTAAGAAAACCAGAAATTGATGCTTTTTCAGAAGAATTGAAACCACATCAGAAAGCTCTTCTTCCAGACAATTTCACTGTGCTGGACCGGGCTATGATTGAGCACAATCTTCTTAGTGCAAGCAAACTTTATACTAATATCAGCTTTGGTGAGCTAGGCACGCTGTTGGGGATCCCACCTCACAAGGCCGAGAAGATAGCATCAAGAATGATTTATGAGGATAGGATGAGGGGATCTATCGATCAGGAAAAGGGTTTGGGGTATGATGCAGGAGGGGAGCTATTAGCTGTTCTGAGAGTTGAAGCAGTCATACATTTTGATGACGACACTGAAGAGTTGCAGAGATGGGACCAACAGATTGTAGGTCTATGTCAAGCCCTCAATGATGTTTTGGATAGCATGGCCAAGAAGGGTTTCCCAGTTCCTGTTTAA 1323 0.4286 MVSEWTREWLGLKKEGNGDDDKEMRVMESAFASASAITDQRQKIEQYKSILAAVISSNDIAQSRKFIDHMLSDDVPLVVSRQLLQTFAQELGRLEPEIQKEIAHYTLAQIQPRVVSFEEQVLVIREKLAELYESEKQWSKAAQMLSGIDLDSGMRVIDDAFRLSKCVQIACLYLEDDDAVNAEAFINKASFLVSSSQHEVLNLKYKVCYARILDLKRKFLEAALRYYDISQIEKRKIGDEEINEEALEQTLSAAVTCTILAAAGPQRSRVLATLYKDERCSKLKIYPILQKVYLERILRKPEIDAFSEELKPHQKALLPDNFTVLDRAMIEHNLLSASKLYTNISFGELGTLLGIPPHKAEKIASRMIYEDRMRGSIDQEKGLGYDAGGELLAVLRVEAVIHFDDDTEELQRWDQQIVGLCQALNDVLDSMAKKGFPVPV 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02813 440 Gene3D - 317 387 IPR036388 -
Vimu5g02813 440 ProSiteProfiles PCI domain profile. 218 391 IPR000717 -
Vimu5g02813 440 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 12/COP9 SIGNALOSOME COMPLEX SUBUNIT 4 21 434 IPR040134 -
Vimu5g02813 440 Pfam PCI domain 294 382 IPR000717 -
Vimu5g02813 440 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 320 420 IPR000717 -
Vimu5g02813 440 FunFam COP9 signalosome complex subunit 4 315 388 - -
Vimu5g02813 440 SUPERFAMILY "Winged helix" DNA-binding domain 318 382 IPR036390 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02813 K12178 - gmx:100793394 741.495