Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02809 ATGTTTGTGAGGAGAGCAAGCGTGGAAGTTGCATTTAGTCCTGGAGTTTCATCAACCTCTCTCAGGACATATGGCACGAGCAAAGCTATAGATAATGGCACAAACAGTGGCTCGCCGTCTACATATTTTGCTAAAGAGCAAATTCGTTCACGACGTTCTTCTGCTGCTACTGAGGATCAAAATGATACCAGTATGATAGATGTTACTGATAATACCATCAATGCATCAGCCAGGAAATTCAAAAGAGAGTACAAGGAACCGTGGGAGAAGAGCGAGCAACATAAGATGTTTTTATTTCAGCTTCCTAAAAATATGCCTTTTAACGAGGGGAAGGAGAAGGAGCAAATTGGTACAACAGGATCCGGAAAGGCGCGAGCTTTGGAAGAGTTGCCAAGCGGATATATGGGCAAAATGCAGGTGTACAAGAGTGGAGCAATCAAACTTAAACTAGGAGAAGCTCTGTTCGACCTCTCTCCGGGTACAAAATGTGGATTTGCTCAAGATATTGTGGCGGTGAACATTGCACAGAAACAGATCTGCAATCTTGGCGAGATTAGCAATAAGGTTGTTGTAGCTCCTGATCTTGATTCAATTGATCTGAGAAACACTGGAAGCAAAAATGACTAA 627 0.4274 MFVRRASVEVAFSPGVSSTSLRTYGTSKAIDNGTNSGSPSTYFAKEQIRSRRSSAATEDQNDTSMIDVTDNTINASARKFKREYKEPWEKSEQHKMFLFQLPKNMPFNEGKEKEQIGTTGSGKARALEELPSGYMGKMQVYKSGAIKLKLGEALFDLSPGTKCGFAQDIVAVNIAQKQICNLGEISNKVVVAPDLDSIDLRNTGSKND 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02809 208 Pfam RNA polymerase III RPC4 111 194 IPR007811 GO:0003677|GO:0005666|GO:0006383
Vimu5g02809 208 PANTHER DNA-DIRECTED RNA POLYMERASE III 65 198 IPR007811 GO:0003677|GO:0005666|GO:0006383
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02809 Vimu-Chr5 37496207 37497842 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02809 K03026 - gmx:100817982 194.126
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02809 5 37496207 37497842 Vimu5g02809 5 37496207 37497842 ECH