Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02807 TTGAAAGTTCTGTGTACAAGGAAATTACCAGTACAACAAATTAGTGGTAGCAGAGCTTTTGGGTTTTTGGATTTATTAGTGCAGTCAATCACCCTCTTCCCTGCACTCATGGCTCTTCTCACTTTCCCTCACTTTTCTTCTCATTTTCTATCACGTTCTTCCTTCCCAAACATCCATTCTTTCTCTCCAACTCGACGCTACTGTTCGATCAAGGCAACCGGAACGGCGATTCTGTGGTTCAAACACGATCTCCGAACCGATGACCACCCCGCGCTTCTCGCCGCCTCCACCTTTACCTCACTTCTTCCTATATACGTCTTCGATCGCCGCATTCTTTCGCGTTTCTCCGATGAGACGCTGGAACTGCTTCTGCTTGCACTGCAAGATTTGAGGAAGTCGCTGAAGGATCGCGGTTCCGATTTGATGATCAGATTCGGCAATGCGGACAGCGTCATACAGCAGCTTGCAACGGAGGTCAAAGCCACTTGTGTGTTCGCGGAACAAGAGGTGGAGTATGAGCTACGCCTCATCATAGATGTGCTAAAACAGCGTTTGAAGTCCGTCGGTGGTCCGCAAGGGAGTCCTAGGATTGAATTATTGCAAACTCCGTTTTATGAAGTGAAGGATTTGCAAAAGCTTCCAGCGTCGTATGGTGAGTTTAAGAAACATCGACTTCCTGTGACTACACCACTTCAGCTGTCAGTGTCAACGTTGCCTGGTGTAGAGATAGAACTGGACTGGGGTGAGTTCCGTGGTGTTCTCCCCTCGTATGATGATATAAAGGGATTTATGACCAGCAGCCAACGTAAATCAGGAGAGAATTGGAGGCTAATCAAGGAAGCCTCAGCTGAAACCGTTTTACGAAGAAAAGCATTGGAGTCTGGCGATAGAATTGAAAGAAGTTCTAACTTTGAGCAAACACAATCAAGGGAGCGTAGTGGATCTGTTTTTGTGACAAAAGAAGGAAATGCCGTAGGAGGTGGGACAAACAATGTACTGAATGCACTAGCTGCTTATCTAAGATATTTGGAAGGAACAGCTCGTGATGATTGGCAAGAGGTGCATGAAAAAGTGCGTGCTTTTGAAAGTCGGGATGGAGCATCATTTATTGGTCTATTCGGTCCTGCCCTGTCTCTTGGCATTATTTCTAGAAGAAGAGTATATTATGAAGCTATCAAATATGAGCAAGAAAGAAATGCAGGTTTCTTATCACCCTTTGGTTATTCAGCTGCCACAATTGCAGCAGCAGTTGATGCTGTGTGCTCAATGGAGTGGTATTGGCTTATGGCTTTGAGAAATCAGACAAACAATGACGGAGTATACTCAACAAGGATATGGAAATGGAAAGGATTTCTTATCGAGTATACAGTTGCTGGTGAAGATGGTCCTGCCGTTCTTCTTGTGCATGGTTTTGGTGCCTTTTGGGAGCATTACCGTGACAACATAAATGGTTTAGCTGAATCTGGAAATCGAGTTTGGGCAATTACTATTTTAGGATTTGGCAAATCAGAAAAGCCAAATGTTGTATATACTGAACTCTTGTGGGCTGAACTATTGAGAGATTTTATTGTTGATGTTGTGGGTGAACCAGTTCACATTGTTGGCAACTCAATTGGCGGTTATCTTGTTGCTATCGTTGCTGGTATTTGGAGTGATTTGATCAAATCCCTTGTTTTGATCAACAGTGCGGGCAATGTCATCCCAAGTTATTCATTCATACCACTGTCTAGAGTTCAGGACAGGCAAACTTCGGGGGCTTCCTGGTTGGGGTCTCGCATTCTTCTATTCTACTTGAGGCTAAGAACTCAGGAGTTACTTAAGAAATGTTATCCAACAAGGGTTGAAAGAGCGGATGATCGGCTCATAAATGAAATGCTAAGAGCATCATATGATCCTGGTGTGCTTGTGGTGTTGGAAAGCATCTTTAGCTTTAATCTTTCCATACCTGTAAACTTTCTTCTTGAAGATGTCAAGGAAAAGGTCCTAATCATACAGGGAATGAAAGATCCGATTTCTGATTCCAACTCCAAGGTGGCTATGCTTAAAGAACACTGTGATGGGGTTATAATTAAGGAGTTAGAAGCTGGTCATTGTCCGCACGATGAGGTACCAGAACGAGTTAATACTATCATTTGTGAGTGGATAATTGGTGTAGAAAGTAAAATTTTGGTAGAAAGTCCGGTGTAA 2187 0.4353 MKVLCTRKLPVQQISGSRAFGFLDLLVQSITLFPALMALLTFPHFSSHFLSRSSFPNIHSFSPTRRYCSIKATGTAILWFKHDLRTDDHPALLAASTFTSLLPIYVFDRRILSRFSDETLELLLLALQDLRKSLKDRGSDLMIRFGNADSVIQQLATEVKATCVFAEQEVEYELRLIIDVLKQRLKSVGGPQGSPRIELLQTPFYEVKDLQKLPASYGEFKKHRLPVTTPLQLSVSTLPGVEIELDWGEFRGVLPSYDDIKGFMTSSQRKSGENWRLIKEASAETVLRRKALESGDRIERSSNFEQTQSRERSGSVFVTKEGNAVGGGTNNVLNALAAYLRYLEGTARDDWQEVHEKVRAFESRDGASFIGLFGPALSLGIISRRRVYYEAIKYEQERNAGFLSPFGYSAATIAAAVDAVCSMEWYWLMALRNQTNNDGVYSTRIWKWKGFLIEYTVAGEDGPAVLLVHGFGAFWEHYRDNINGLAESGNRVWAITILGFGKSEKPNVVYTELLWAELLRDFIVDVVGEPVHIVGNSIGGYLVAIVAGIWSDLIKSLVLINSAGNVIPSYSFIPLSRVQDRQTSGASWLGSRILLFYLRLRTQELLKKCYPTRVERADDRLINEMLRASYDPGVLVVLESIFSFNLSIPVNFLLEDVKEKVLIIQGMKDPISDSNSKVAMLKEHCDGVIIKELEAGHCPHDEVPERVNTIICEWIIGVESKILVESPV 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02807 728 Gene3D alpha/beta hydrolase 433 716 IPR029058 -
Vimu5g02807 728 Gene3D HUPs 63 214 IPR014729 -
Vimu5g02807 728 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 74 236 IPR036155 -
Vimu5g02807 728 Pfam DNA photolyase 77 198 IPR006050 -
Vimu5g02807 728 Pfam Alpha/beta hydrolase family 465 708 IPR000073 -
Vimu5g02807 728 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 74 210 IPR006050 -
Vimu5g02807 728 PANTHER DNA PHOTOLYASE 66 723 - -
Vimu5g02807 728 SUPERFAMILY alpha/beta-Hydrolases 441 715 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02807 Vimu-Chr5 37487014 37491416 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02807 449 574 Acyl Lipid Metabolism Gene Families AT2G26740 30.075 8.72e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02807 - - gmx:100813721 1164.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02807 5 37487014 37491416 Vimu5g02807 5 37487014 37491416 ECH