Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02800 ATGTCGTTTCGGTCGGAGAATCAGAACCCAAACCCTACAACTCCCACTCCGCCATTGAAGAAGCGTTGGTCAGACTTATGGACCAAATCCAAACCCATTAACCAAATGGTCATGGCAATGAAGCTTCGTTCTCTCTCTCCTCGCCGCGCAGCCAAAGCCGACGCCACTCTCTCTCCTTTCCCCGCCGTCGCCATCGCCGATCGAACCCTTCTCCTCTCCGACCAGATTCTCCTCAAAATCCTCGCACTCGTCTCCGACTCCCCCGCTCAGCGAAACTCCAATTCTCTTGTCTGCAAGCGCTGGCTCAATCTCCAAGGCCGTCTTCTTCGCTCCCTCATAATCTCCGACTGGAACTTCCTTCTCTCCGGCAGACTCATCCACCGCTTCCCCAATCTCAACCACGTCGACTTGCTCTCCGCCGCCTTCATTTCACCTCGTAATTCCGCCATTCTCCTCAGCCACCGCGTCCTCTCCGTGCACCTCCATTCCGACCTCGCCCCCAATTGGTGCTTCTGCGAGGAAAACATGCTCCCCGTCGAAGTCATCGACAACGGACTCGCCACCCTCGCCGCCGGCTGCCCCAACTTGCGCCGCCTCCACGTCATCGGCGCCAGCGAGATGGGGCTGCTGAGCGTCGCGGAGGAGTGTCCCACTCTGCAGGAACTCGAACTGCAGTGCTGCAGCGACAACGTTCTGCGCGGGATTGCGGCCTGTGCGAATCTTCAGATTCTGAAGCTCGTTGGGCATGTTGATGGGCTCTACAGTTCGGTGGTTTCTGATATTGGGTTGACAATTCTGGCGCAGGGGTGCAAGAGGCTGGTGAGGTTGGAGCTTTGTGGGTGCGAAGGGAGTTTTGATGGGATTAAGGCCATTGGGAAATGTTGTTTAATGTTGGAGGAGTTGACGTTTTCTAATCATAAGATGGATGATGGATGGCTTGCTGCCATCCCGTTTTGTGAGAATTTAAAGACTTTGAGGTTCCAGTCTTGTAAGAGGATTGATTCAAATCCTGGAATGGAGGAGTATTTGGGTTCTTGCTCTGCTCTTGAAAGGTTGCATTTGCAGAAATGTCAGCTTCGGGATAAGAAGAGTGTTTCGGCTCTGTTTTCTGTGTGCAGGGCTGTCAGGGAGATTGTTCTTCAGGACTGTTGGGGATTGGATAATAGCATCTTCTCTTTTGCAATGACGTGCAGGCGGGTAAAGTTGTTTTACTTGGAAGGGTGTTCATTACTAACGACAGAAGGTTTGGAGCAAGTAATTCATTCATGGAAGGAGCTTCAGAGCCTTAGAGTAGTGTCATGTAAGAATATAAAGGAGTGCGAGATCTCTACTGCGCTGGCAACCCTGTTTACCAGTCTCAAGGAGTTGAGATGGAGCCCTGATACCAAATCACTTCTTCAATCCAGTGTTACAGGGATAACCATGGCAAAAAAAGGTGGTAAATTTTTCAAAAGGGCACGATAA 1464 0.515 MSFRSENQNPNPTTPTPPLKKRWSDLWTKSKPINQMVMAMKLRSLSPRRAAKADATLSPFPAVAIADRTLLLSDQILLKILALVSDSPAQRNSNSLVCKRWLNLQGRLLRSLIISDWNFLLSGRLIHRFPNLNHVDLLSAAFISPRNSAILLSHRVLSVHLHSDLAPNWCFCEENMLPVEVIDNGLATLAAGCPNLRRLHVIGASEMGLLSVAEECPTLQELELQCCSDNVLRGIAACANLQILKLVGHVDGLYSSVVSDIGLTILAQGCKRLVRLELCGCEGSFDGIKAIGKCCLMLEELTFSNHKMDDGWLAAIPFCENLKTLRFQSCKRIDSNPGMEEYLGSCSALERLHLQKCQLRDKKSVSALFSVCRAVREIVLQDCWGLDNSIFSFAMTCRRVKLFYLEGCSLLTTEGLEQVIHSWKELQSLRVVSCKNIKECEISTALATLFTSLKELRWSPDTKSLLQSSVTGITMAKKGGKFFKRAR 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02800 487 FunFam F-box protein 335 469 - -
Vimu5g02800 487 SUPERFAMILY RNI-like 107 248 - -
Vimu5g02800 487 FunFam F-box protein At5g51380 65 334 - -
Vimu5g02800 487 PANTHER UNCHARACTERIZED 71 445 - -
Vimu5g02800 487 Gene3D Ribonuclease Inhibitor 215 463 IPR032675 -
Vimu5g02800 487 Gene3D - 68 107 - -
Vimu5g02800 487 SMART LRR_CC_2 397 422 IPR006553 -
Vimu5g02800 487 SMART LRR_CC_2 270 294 IPR006553 -
Vimu5g02800 487 SMART LRR_CC_2 346 371 IPR006553 -
Vimu5g02800 487 SMART LRR_CC_2 216 238 IPR006553 -
Vimu5g02800 487 CDD F-box_AtTIR1-like 71 107 - -
Vimu5g02800 487 SUPERFAMILY RNI-like 254 457 - -
Vimu5g02800 487 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02800 Vimu-Chr5 37432479 37434401 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02800 K10268 - gmx:100812193 791.956