Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02780 ATGGGATTTGATAATGAGTGCATAGTGAACATTCAATCTCTTGCTGGAGAGTACTTCTGTCCTGTGTGTCGGTTGCTTGTATTTCCAAATGAGGCTTTGCAGTCACAATGTACTCATTTATACTGCAAGCCATGTTTGACATACGTTGTGAGCACCACAAAGGCTTGCCCATATGATGGTTACTTGGTCACTGAGGCAGATTCCAAGCCTCTGACAGAGTCAAATAAGACACTTGCTGAAACTATTGGAAAAATCACGGTTCACTGCCTTTACCATAGGAGTGGATGCACATGGCAGGGAACTTTGTCTGAGTGCACATCCCATTGTTCTGGATGTGCTTTTGGCAATTCCCCCGTAGTTTGCAATAGGTGTGGGATCCAAATAGTGCATCGCCAAGTACAAGAACATGCACAAAACTGCCCTGGTGTGCAAGGTCAGGCACAACAGGTGACCACTGCCCAGGATTCTTCAACTACTAGTGTCGCTTCTTCTACTGATCAGAACCAGAATGCTGCTCCCGTTGCAGCAACTGCTGCGCAAGCTGCTGTTTCAACTACCATGCCTGGGCAGGTTTCTAATCAGCAACCCAATCTTACGCCCCAAACACAAGCTTTAGTTCAAACTTCTGGGCAGCCAACGGCAGAGCAGTGGTATCAGCAGCAACAATATCAACAATACTACCAACAATACCCTGGGCAAGATCCATACCAACAGCAGTATCAACATTACTATCCCTATCAGCAGTCCATGGTTCCACAGTACCAGCAGGCCTATAGTCAACCCCAACCTCAGTCACAATCGCAGCCCCAGGCCCAGCTTCAACCTCAGCCCCAGCCACAGGCCCAACACCAATCACAGCAGCCTCAACTCCAACAACCTCAGGTTCAATCTCAACCACTTTCACATATTCAGGCTCCGGTTATCCCACCATCTCAGAATCAGATGCAAGTTCAACAACAACCTCAGCAACTTCAACCTGCTGTGCAGCCTCATGGACAGACGAGTCATGCACCTGGTCATTCCCTCCCTCAATCTCAGACTCAGCCCTATCCATACCCACAAGTTCAGCTTCATTCTGTCCAACCTCAACCTCAACAGCCTACGCAAATTCCTCCATATCAGCAGCCTCTTCCTCAAGTGCAGCATTCACAACCTCAAATTCAGCAACCAATTCAGAAGTATCCTGTTCCTCAATCTCAAGTTCACGCACAACTGCAACCTAATGCTCCAGTTCAACATCCCTCTCAGCTCCCAATGCCTCCTCCTCATCCTGTGACACCTAGTGTCCAGCCTCAAGTGCAAAATGCAGCAACACCTTCAGTGACGGGACATCACTCTTATCCGCAACCTCTGCCTCACCCAAATATGCAACCAGGAGTTCCTCAACATCCTATGCACGGGCATCCTCAAAGTGGGCCCCAACCCCATGCTCAACACCCTGTTCAGATGCAAAATCAGTTTCCTCCACAAATTCCAACCATGCGTCCTAATCAATCTCATGCTATGTATCCTAATCAGCAATCATCTGTTCAGGGCCAAACTACCCCTCCTTTGCAACAACAGCCAGTATATTCCCACAATCAACAACCCGGACAAATTAGCCAACGTCCTACACTGCAACCGGTTCAACAGATACCTCAACAGCAACCATTTGCACAGCACCAAATGCCTATGCCATCACATTTGCGGCCACCGGGTCCAGCACATTCATTTCCCAAACATGTGTATCCACAGCCACAGGGTAATATTGCACCATCAAATAACATTCAGCAGAATCAATCTCAAAATGCTGGAGGAAGGCCTTTAGTGCCTAACCATGCAGGACATCTACAGCCATTTGCTCAATCTTCCAATACTATTCCAGTTAGACATGGGCAAAATGGTGCTGGCTACTTGCTTGAAAATCAGAAATCGTTGGCTGGTACCAATAATCAAGTACAGTTGCCTTCTGAGTTGCAGTCTAGGGCACCAGAAACAATTGAAAGACACGGTGATGTTGTTGAACAACAAATTGACACTGCCGCTGGTAAACTGGGTAAAAATTTTAAAGATTTGGACTCAGTGTCTGGACCAACAAATGAATTGAAATCTGAAAAATTCGAAGCAAGTTTGAAACCAGTAGAGGTTGGGAACATGCTAAATAATGAAGATCCACACTCTATTAAGACTTCAGTCCCAAGTGCCAATGCAGTAGAAAATGGTGATTCTTTGAATAAGAATCTTGGGATGGGGACAGCTGCTGAAAGCACTTGGAAGCCTTCAGTCAGTACTAAACCTGGTGGTGCAATGCACGGGGTTCAAAATGACACCAATGAACATTCTGTCCAAGGCAATGAGTTTCAAGAAGGACATCCACAGAAGACAGAGACAAAACTACCTGAGTCAGAAACTGATAAATCACAAAATGATGACAATTCTGCAGCATCTAACACTCAAAGCAATGGGGGTTTTGCTCAGCTGTCTCACTCTTCCACTTTCACAGATCAGAGTAAGCATCAACAACCAATGACCAATTATGGGCCTTCCGTCCAGCAGAGATCTTCTGCAATGTTAGGTTCGCAATTGCCACACCCAACAATTCCAAACCAGCCACTCTCTTCATTGCACTCTTCAGCCCTTGTCAGGAATCATGGATCTGCCCATGATCCCCACACAGGACAGCCCTTAGCAGAGAGTTTTCCACCAAGCATGTTTAAGCAACCACAAGATTCTGACATTACCCCTGGAAGGAGCTTTCAACCTCAATCTCTTGGACCCCCGCAACCATTTAACCAGGTCCACGAGCCTCCTTTCCGTGCCGGAACTTCCAATTTGTCTCGTCTTGGAGGGCCTCAATTTGGTGCACCACTTCCTGGAGATATGCATGGTCGAATGGCAGCAAACATACCGCCACATGGTCCTGAAGGTTTTGGTTTGCATGATGATAGGTTCAAACCTTTCCTTGTTTCAAATCAACAAAATATTGACAGAAGAGAGTATGATGACGATCTTAAGAAATTCTCTAGGATGCCTTTGGATGCTGAGTCAATTTCTAAATTTGGGAATTACTCACTAAGTGCACATGAATCTGGAAAGAGATCAGTTGGTATTCATGATGATGTCATTAAGAAATCAGGTTCTACGCTTCATCCTGGTTATCTTGGACCAGGTCCTGGATATGGGAGACATCATATGGATGGTATGACTCCTAGAAGTCCTGTTGGTGAATATGCTGAGATGTCTTCCAGGAGATTGGGGGCACACTCTGGTAGTCTTGTTGGTAAGTCAGGAATAGATGATTTTGATGGCAGAGTTTCTCGTCATTTTGGTGGTGAGTTCCGTGATAGTCGGTTTCCTCATTTGCCTAGCCATTTGCGTAGAGATGAATTTGATGGTTTTGGTAATTTCCGAATGGGTGAACATCCAAGGAGTGGTGATTTCATTGGTCAAGATGAGTTTGCTGGCCATTTTCGAAGGGGTGATCCTTTGGGTCCTCATAATTTTCCTAGACATTTGCAGCTTGGGGAGCCTGTTGGTTTTGGTGCCCATCCTGGTCATATGAGAGCAGTTGAACATGGCAGTTTTCGTAGTTTTGAATCTTTTGCTAAAGGCAACCGGTCAGGTCATCCACAACTTGGTGAGCCTGGGTTCAGGAGCAGCTTTTCTCTTCCTGGATTTCCTAATGATGCTGGATTTTTAACAGGAGATATCAGGTCGTTTGATAATTTGAGGAGAAGGAAGACTTCCAGCATGGGGTGGTGCCGGATATGTAAAGTTGACTGTGAAACAGTAGAAGGTCTGGACTTGCATTCACAAACAAAGGAGCACCAGAAGATGGCTATGGATATGGTTAAGACAATCAAGCAAAATGCGAAGAAACAGAAGTTGTAG 3870 0.4579 MGFDNECIVNIQSLAGEYFCPVCRLLVFPNEALQSQCTHLYCKPCLTYVVSTTKACPYDGYLVTEADSKPLTESNKTLAETIGKITVHCLYHRSGCTWQGTLSECTSHCSGCAFGNSPVVCNRCGIQIVHRQVQEHAQNCPGVQGQAQQVTTAQDSSTTSVASSTDQNQNAAPVAATAAQAAVSTTMPGQVSNQQPNLTPQTQALVQTSGQPTAEQWYQQQQYQQYYQQYPGQDPYQQQYQHYYPYQQSMVPQYQQAYSQPQPQSQSQPQAQLQPQPQPQAQHQSQQPQLQQPQVQSQPLSHIQAPVIPPSQNQMQVQQQPQQLQPAVQPHGQTSHAPGHSLPQSQTQPYPYPQVQLHSVQPQPQQPTQIPPYQQPLPQVQHSQPQIQQPIQKYPVPQSQVHAQLQPNAPVQHPSQLPMPPPHPVTPSVQPQVQNAATPSVTGHHSYPQPLPHPNMQPGVPQHPMHGHPQSGPQPHAQHPVQMQNQFPPQIPTMRPNQSHAMYPNQQSSVQGQTTPPLQQQPVYSHNQQPGQISQRPTLQPVQQIPQQQPFAQHQMPMPSHLRPPGPAHSFPKHVYPQPQGNIAPSNNIQQNQSQNAGGRPLVPNHAGHLQPFAQSSNTIPVRHGQNGAGYLLENQKSLAGTNNQVQLPSELQSRAPETIERHGDVVEQQIDTAAGKLGKNFKDLDSVSGPTNELKSEKFEASLKPVEVGNMLNNEDPHSIKTSVPSANAVENGDSLNKNLGMGTAAESTWKPSVSTKPGGAMHGVQNDTNEHSVQGNEFQEGHPQKTETKLPESETDKSQNDDNSAASNTQSNGGFAQLSHSSTFTDQSKHQQPMTNYGPSVQQRSSAMLGSQLPHPTIPNQPLSSLHSSALVRNHGSAHDPHTGQPLAESFPPSMFKQPQDSDITPGRSFQPQSLGPPQPFNQVHEPPFRAGTSNLSRLGGPQFGAPLPGDMHGRMAANIPPHGPEGFGLHDDRFKPFLVSNQQNIDRREYDDDLKKFSRMPLDAESISKFGNYSLSAHESGKRSVGIHDDVIKKSGSTLHPGYLGPGPGYGRHHMDGMTPRSPVGEYAEMSSRRLGAHSGSLVGKSGIDDFDGRVSRHFGGEFRDSRFPHLPSHLRRDEFDGFGNFRMGEHPRSGDFIGQDEFAGHFRRGDPLGPHNFPRHLQLGEPVGFGAHPGHMRAVEHGSFRSFESFAKGNRSGHPQLGEPGFRSSFSLPGFPNDAGFLTGDIRSFDNLRRRKTSSMGWCRICKVDCETVEGLDLHSQTKEHQKMAMDMVKTIKQNAKKQKL 1289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02780 1289 MobiDBLite consensus disorder prediction 475 555 - -
Vimu5g02780 1289 MobiDBLite consensus disorder prediction 413 428 - -
Vimu5g02780 1289 MobiDBLite consensus disorder prediction 154 173 - -
Vimu5g02780 1289 Coils Coil 1284 1289 - -
Vimu5g02780 1289 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 120 IPR013083 -
Vimu5g02780 1289 MobiDBLite consensus disorder prediction 254 364 - -
Vimu5g02780 1289 SUPERFAMILY TRAF domain-like 84 141 - -
Vimu5g02780 1289 CDD RING-HC 18 57 - -
Vimu5g02780 1289 MobiDBLite consensus disorder prediction 716 783 - -
Vimu5g02780 1289 MobiDBLite consensus disorder prediction 410 607 - -
Vimu5g02780 1289 MobiDBLite consensus disorder prediction 802 874 - -
Vimu5g02780 1289 MobiDBLite consensus disorder prediction 429 445 - -
Vimu5g02780 1289 SUPERFAMILY RING/U-box 13 73 - -
Vimu5g02780 1289 ProSitePatterns Zinc finger RING-type signature. 37 46 IPR017907 -
Vimu5g02780 1289 ProSiteProfiles Zinc finger RING-type profile. 20 59 IPR001841 -
Vimu5g02780 1289 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 1A-LIKE 1021 1289 - -
Vimu5g02780 1289 MobiDBLite consensus disorder prediction 580 600 - -
Vimu5g02780 1289 MobiDBLite consensus disorder prediction 784 801 - -
Vimu5g02780 1289 MobiDBLite consensus disorder prediction 897 922 - -
Vimu5g02780 1289 MobiDBLite consensus disorder prediction 713 932 - -
Vimu5g02780 1289 MobiDBLite consensus disorder prediction 254 388 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02780 - - gsj:114380210 1871.67