Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02779 ATGGCATTTCACGTAGCTTGTCCAATTACATGTCGTCGAATCTGTTTCTGCGCGCTAGGGTTTCCGAGCGGGGTTCAAGCTTCTGAAGACGGTTCCGCTGCCAATGGCTTTGCTCAGGACGTCGGCGCGCTTTGGGATTTTCTTGCCGACACATGCAGGGACGATGCTACCGTTCAGGTTTCTGTCCCCAAGGTTCTGCCGCCGCCTCCGCCGCCGCCGGACGGTCTTCCTCTCAACGCCGACGCGCTGGATGAGTCTGCCTCTATGAAGGCCAAGCGCATCGCGCTACAGCGGAAGGGCGCCGCCGCCATGATCGCCGCCGAGGAGTACGCCCGTCGTTTTGAGTCTGGCGACGTTGTGCTCAGTGCTGTTGGAATTTTGATGTTGAGGGCATGGTTTGGTAGACGAGCAGGGTTTATCACTAATACTCCAGGAAATGTTACCGGAGAGGAGCAGGGGCAAGCCAATAGGAGCTATTGCCGAATTTGCAAGTGCGGGGAGAATGAAGGAAGTGAGAAAGCTCAGAAGATGCTGTCGTGCAAAAGTTGTAGTAAAAAGTACCACAGGAACTGCTTGAGAAGTTGGGGTCGAAATAGAGATTTATTTCATTGGAGTTCATGGACCTGTCCTCTTTGCCGAATTTGTGAGGCTTGCAGAAGGACTGGTGATCCAAGTAAGTTCATGTTTTGCAAAAGGTGCGATGGTGCTTATCATTGTTACTGTCTGCAACCTCCTCATAAGAGTGTTTGTAACGGGCCCTATTTGTGCACAAAACACGCAAGGTGTCACAGTTGTGGGTCAAATGTCCCTGGAAATGGATTAAGTGTGAGGTGGTTTATGGCATACACAAACTGCGATGCATGTGGAAGATTGTTTACAAAAGGGAACTACTGTCCCGTTTGCTTGAAGGTCTACAGAGATTCAGAATCAACACCTATGGTTTGCTGTGATACTTGCCAGCTTTGGGTACATTGTCAGTGTGACAATATCAGTGATGAAAAATATCACCAGTTTCAAGTGGATGGGAATTTGCAGTATAAATGTCCTACTTGTCGTGGGGAATGTTATCAGGTCAAGAATCCTGAAGATGCTGCACAAGAGATTTGGAGGAGAAGGAATGTTGCTGAGAAAGATTTGATTGCTAGCTTGAGGGCTGCAGCTGGTTTGCCCACTCAAGACGAGATATTTTCCATTTCACCATTTTCAGATGATGAGGACAGTGGGCCTTTAAAATTAAAGAGTGAATATACCCGTTCCTTTAAGTTCTCTCTGAAGAATTTGTCCAATGACTCACCAAAGAAGAAATCTTCAAGCAAAAAAACTGCTAAGAGAAAAGACTCTGAGTCATTTATGACTAATAAAATTGACACACATAATAGTTTTGAAGGACACAGTGATATTAAATCTTTGCATAGCTTAGATGATGATAAGAATGATGATATACAATCCCAGAGAAATGATGGTCCAGATGTTTACTCATCACCTGCTACTGGAAGCTTGAGTCAAACTGAAGCATCTTTCCCTATTAGTCAACCAGGAGTTTTGAAGCATAAGTTTGTTGATGAGGTGATGGTCAGTGATGAAGAGAGGAAACCTAGAGTTGTTCGAATTAAAAGCAACAAGCCCAATGTTCTGGATAGTGAAGAGGAAAGTGGAAAACAGAGTGTTAAAACTCAGAATGTGAAAGGGAAGAAGTTGGTTATAAATTTGGGAGCACGGAAAATTAATGTGGCCAGTTCCCCACGATCTGATACGTCAAGCTGCCAAAAAGATCAAGATCTGGTGACTGTTAATGGAAATGAAGATATAAGCCAATCCAAGAAGGGGGACAGATTTGCATTAGATAGACAGGACGGCACAGCTAGGCATATTGATGGTAAAGGAAATAGAGTTGACTCTGGACAATCAAAACTTTTTACCGTTTCGGGGAGAGAAGGAAATTTGATTAAGCTGGGAAAAGTTAAGCCAGATGTTTCTGAATTCAACCTAACTGCCGGTAGGAGCAATATGTCTGATGGGCGTGTAAAACATAGTATTGATGGGATGATTGGTCAGGTTGGAATCAAAGTCACATCAAGAGGTGAAAGAACGAATTTGGGGAAGCAATCAGAAGGTAGCTCTGATGCAAATGAGGAGGTAGATGACAATAATAATCGTACACCTTCTCATTCTTTGCCAAAAGATTCTAAACCTTTACTAAGATTTAAATTCAAGAAACCTAGCATTGAAACTCAAAATTCCCCTCATCGGGAGGAGGAGAAGACGACAATCAAGGGCCAAAGGTCAAAAAGGAAGAGACCTTCACCTTTTAAAACACCATTTAATGAGTCTGAAGGTGTAAGTCAATCACATCAAGACAGTGCAATGGATGAGATCATGGATGCAAACTGGATTTTAATGAAATTGGGAAATGATGCAATTGGAAAGAGAGTTGAAGTTCATCAGACATCTGACAATTCTTGGCACAAGGGAGTGGTTACTGACGTTGTTGAAGGCACTTCGAAGTTGTATGTTGCGTTAGACGATGGGAAAGTGAAGACCTTGGAACTCAGGAAACAGGGGGTCCGTTTCGTTCCTCAAAAGCAGAAGAGATCCAAGACATGA 2604 0.4386 MAFHVACPITCRRICFCALGFPSGVQASEDGSAANGFAQDVGALWDFLADTCRDDATVQVSVPKVLPPPPPPPDGLPLNADALDESASMKAKRIALQRKGAAAMIAAEEYARRFESGDVVLSAVGILMLRAWFGRRAGFITNTPGNVTGEEQGQANRSYCRICKCGENEGSEKAQKMLSCKSCSKKYHRNCLRSWGRNRDLFHWSSWTCPLCRICEACRRTGDPSKFMFCKRCDGAYHCYCLQPPHKSVCNGPYLCTKHARCHSCGSNVPGNGLSVRWFMAYTNCDACGRLFTKGNYCPVCLKVYRDSESTPMVCCDTCQLWVHCQCDNISDEKYHQFQVDGNLQYKCPTCRGECYQVKNPEDAAQEIWRRRNVAEKDLIASLRAAAGLPTQDEIFSISPFSDDEDSGPLKLKSEYTRSFKFSLKNLSNDSPKKKSSSKKTAKRKDSESFMTNKIDTHNSFEGHSDIKSLHSLDDDKNDDIQSQRNDGPDVYSSPATGSLSQTEASFPISQPGVLKHKFVDEVMVSDEERKPRVVRIKSNKPNVLDSEEESGKQSVKTQNVKGKKLVINLGARKINVASSPRSDTSSCQKDQDLVTVNGNEDISQSKKGDRFALDRQDGTARHIDGKGNRVDSGQSKLFTVSGREGNLIKLGKVKPDVSEFNLTAGRSNMSDGRVKHSIDGMIGQVGIKVTSRGERTNLGKQSEGSSDANEEVDDNNNRTPSHSLPKDSKPLLRFKFKKPSIETQNSPHREEEKTTIKGQRSKRKRPSPFKTPFNESEGVSQSHQDSAMDEIMDANWILMKLGNDAIGKRVEVHQTSDNSWHKGVVTDVVEGTSKLYVALDDGKVKTLELRKQGVRFVPQKQKRSKT 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02779 867 MobiDBLite consensus disorder prediction 687 786 - -
Vimu5g02779 867 ProSitePatterns RecR protein signature. 285 307 IPR015967 GO:0006281|GO:0006310|GO:0046872
Vimu5g02779 867 FunFam PHD finger family protein 154 269 - -
Vimu5g02779 867 PANTHER HL01030P-RELATED 142 590 - -
Vimu5g02779 867 ProSiteProfiles Zinc finger RING-type profile. 160 213 IPR001841 -
Vimu5g02779 867 MobiDBLite consensus disorder prediction 485 509 - -
Vimu5g02779 867 ProSiteProfiles Zinc finger PHD-type profile. 157 215 IPR019787 -
Vimu5g02779 867 ProSiteProfiles Zinc finger PHD-type profile. 295 354 IPR019787 -
Vimu5g02779 867 MobiDBLite consensus disorder prediction 729 759 - -
Vimu5g02779 867 SUPERFAMILY FYVE/PHD zinc finger 204 265 IPR011011 -
Vimu5g02779 867 MobiDBLite consensus disorder prediction 459 484 - -
Vimu5g02779 867 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 142 213 IPR013083 -
Vimu5g02779 867 MobiDBLite consensus disorder prediction 538 555 - -
Vimu5g02779 867 MobiDBLite consensus disorder prediction 538 560 - -
Vimu5g02779 867 CDD RING-H2 160 213 - -
Vimu5g02779 867 SMART ring_2 160 212 IPR001841 -
Vimu5g02779 867 SMART ring_2 298 351 IPR001841 -
Vimu5g02779 867 MobiDBLite consensus disorder prediction 432 452 - -
Vimu5g02779 867 MobiDBLite consensus disorder prediction 427 512 - -
Vimu5g02779 867 FunFam PHD finger family protein 292 354 - -
Vimu5g02779 867 MobiDBLite consensus disorder prediction 691 706 - -
Vimu5g02779 867 ProSitePatterns Zinc finger PHD-type signature. 160 212 IPR019786 -
Vimu5g02779 867 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 214 264 IPR013083 -
Vimu5g02779 867 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 292 354 IPR013083 -
Vimu5g02779 867 SUPERFAMILY FYVE/PHD zinc finger 294 353 IPR011011 -
Vimu5g02779 867 SUPERFAMILY FYVE/PHD zinc finger 153 213 IPR011011 -
Vimu5g02779 867 SMART PHD_3 297 352 IPR001965 -
Vimu5g02779 867 SMART PHD_3 214 260 IPR001965 -
Vimu5g02779 867 SMART PHD_3 162 213 IPR001965 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02779 - - gmx:100815407 1523.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02779 5 37294941 37302480 Vimu5g02779 5 37294941 37302480 ECH