Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02778 ATGAATGCTCCAGATCGTTATGAGCGTTTCGTCGTACCTGAAGGCACCAAAAAGGACACCAAGATCATCAATGCCGCCTCCTTCACCATCGAGCGAGAGGAACACACTATCGGCAACATCCTGCGCATGCAACTCCACAGAGACCCCAACGTGTTATTTGCTGGATACAAGCTTCCCCACCCTCTTCAGTATAAAATCATTGTCAGGATACATACTACAAGCCAGTCTTCGCCAATGCAGGCATATAACCAGTCTATTAATGATCTGGACAGGGAACTTGATCATCTGAAGAACGCCTTTGAGGTAAAAGCGTCTTTTTGTTATTCTTAG 330 0.4576 MNAPDRYERFVVPEGTKKDTKIINAASFTIEREEHTIGNILRMQLHRDPNVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQSINDLDRELDHLKNAFEVKASFCYS 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02778 109 Coils Coil 79 99 - -
Vimu5g02778 109 PANTHER DNA-DIRECTED RNA POLYMERASE I,II,III 1 103 - -
Vimu5g02778 109 FunFam DNA-directed RNA polymerase II subunit RPB11-like protein 1 107 - -
Vimu5g02778 109 Hamap DNA-directed RNA polymerase subunit Rpo11 [rpo11]. 18 100 IPR022905 GO:0003899|GO:0006351
Vimu5g02778 109 CDD RNAP_II_RPB11 13 100 IPR037685 GO:0001055|GO:0005665|GO:0006366
Vimu5g02778 109 Gene3D - 1 106 IPR036603 GO:0006351|GO:0046983
Vimu5g02778 109 Pfam RNA polymerase Rpb3/Rpb11 dimerisation domain 26 98 IPR009025 GO:0006351|GO:0046983
Vimu5g02778 109 ProSitePatterns RNA polymerases L / 13 to 16 Kd subunits signature. 30 61 IPR008193 GO:0003677|GO:0003899|GO:0006351
Vimu5g02778 109 SUPERFAMILY RBP11-like subunits of RNA polymerase 1 102 IPR036603 GO:0006351|GO:0046983
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02778 K03008 - gmx:100527865 200.29