Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02774 ATGGCGTGTATAAAAGGGGTGAATCGATCGGCGTCGGTAGCGCTGGCGCCCGACGCGCCGTACCTTGCTGCCGGGACCATGGCTGGCGCCGTTGATCTGTCATTTAGCTCGTCCGCAAATCTCGAGATATTCAAGCTCGATTTTCAGTCGGACGATTCGGAACTGCCTGTCGTCGCCGAGTGCCCGAGCTCCGACCGTTTCAACCGTCTCACGTGGGGGAAGAACGGTTCTGGCTCCGAAGGATTCGGTCTCGGCCTCGTCGCTGGTGGGTTGGTGGATGGCAACATTGACATCTGGAATCCTCTCACTCTGATCCGCTCGGAGTCAAGTCAAAGTTCTCTGGTTGGACACCTTGTAAGACATAAAGGACCAGTTCGTGGTCTTGAATTTAATGTCATTGCACCAAACCTTCTTGCATCTGGTGCTGAGGATGGTGAAATTTGCATATGGGATTTGGTCAATCCTTCTGAGCCTACACATTTTCCACCACTAAAGAGTACTGGCTCTGCTTCCCAGGGAGAAATTTCATTCTTATCTTGGAACAGTAAAGTCCAGCACATATTAGCGTCTACTTCATATAATGGGACCACAGTGGTCTGGGACCTGAAGAAGCAAAAGCCAGTGATAAGCTTTGCAGATTCGGTTAGAAGGAGATGCTCTGTTTTGCAGTGGAATCCTGATGTTGCCACACAACTTGTCGTCGCATCAGATGAAGATGGTTCTCCTTCTTTGAGGCTTTGGGATATGAGGAATATAATTTCACCAATAAAGGAGTTTTCGGGACACACTAGAGGTGTGATTGCAATGTCGTGGTGTCCCAATGATAGCTCTTATTTGCTTACCTGTGGTAAAGATAGCCGAACTATATGCTGGGACATGATTTCTGGAGAGATAGCCTACGAATTGCCAGCTGGGACCAACTGGAATTTTGATGTGCATTGGTATCCTAAGATACCTGGAGTAATATCAGCATCTTCCTTTGATGGAAAAATTGGTATATATAATATTAAGGGTTGCCGTCAAAGTGGTGCTGGGGAAAATGACTATAGTGCAGTACCACTGAGAGCACCAAAATGGTACAAGCGTCCTGCTGGCGTGTCTTTTGGTTTTGGAGGCAAACTTGTGTCTTTTCATCCCAGGGCATCTTCCACAGGTTCTCCTGGTTCTGGTGCTTCAGAGGTTTATGTGCATAATTTGGTCACTGAAAATGGTCTAGTGAGTCGGTCTTCTGAATTTGAAGCTGCCATACAGAATGGTGAAAGGTCTCTGTTGAGGGTTTTATGTGATAAAAAGTCACAGGAATCAGAATCTGAGGAGGAAAGAGAAACATGGGGCTTTTTAAAAGTTATGTTTGAAGATGATGGGACCGCACGGACAAAACTCCTCTCACATCTTGGCTTCAATGTACCTAGTGAAGCAAAAGAAGTTAACGATGATCTTTCCCAAGAAGTAAATGCACTTGGACTGGAGGATAGAACTGTTGACAATGCTGGACATGTGGCTAATAATGAATCGGTTAATTTCTCTACTGATAATGGAGAGGATTTCTTTAACAATCTTCCTAGTCCTAAAGCTGATACCCCTTTATCTACGTCTGCTGGCACTTTTGTTGTTGCTGAAAATGCCAATGGTTCCGAGAAAATTCAAGATGATGCAGAAATGGAAGAGAGCAGTGACCCTTCATTTGATGACAGTGTTCAGCATGCTTTAGTTGTTGGGGATTACAAGGGGGCAGTTATGCAATGCATTTCTGCAAATAAATGGGCAGATGCATTAGTTATTGCTCATGTTGGGAATGCTTCCTTGTGGGAAAGTACACGTGATCAGTACCTTAAAATGGTCCGATCACCATACTTGAAGATCGTATCCGCAATGGTGAGCAATGATCTATTGAGTTTAGTGAACACTAGGCCCCTGAAATTCTGGAAGGAAACCCTTGCTCTTCTTTGTAGTTTTGCTCAGAGAGATGAATGGACCATGCTTTGTGACACACTGGCATCAAAGCTCATGGGTGCTGGCAATACATTAGCTGCAACCCTGTGTTATATATGTGCTGGGAATATTGATAAAACTGTTGAAATTTGGTCAAGGTGCCTATCTAATGAGTACGAGGGGAAATCTTATGTTGACCTTCTTCAGGATTTAATGGAAAAGACTATTGTCCTTGCCTTGGCAACTGGGCAGAAGCGGTTTAGTGCTTCTCTGTGCAAGCTTGTTGAGAAATATGCTGAAATTTTAGCTAGTCAAGGGCTATTGACTACAGCAATGGAGTATTTAAAACTTTTGGGTTCTGAAGAACTGTCGCCTGAACTTACGATTTTGAAAGATCGAATTGCACTTTCTACAGAACCTGAGAAAGAGTTCAAAACCGCTGCTTTTGAAAATACTCAAGCACATGGTGGGTCCTATTACGGTGCCGATAATTCCAATTATAATAGAAATTACTACCAGGAGTCTGTACCCCCTCAAGTGCAGCATGGTGTTTCTGGAATTCAATATCCTGATAGCTATCAACAGCCGTTTGATCCTAGATACGGAAGAGGTTATGGTGCTCCTACTCCACCCCAGCAACCTCAACAGCCTAATTTGTTTGTTCCACCGCAGACCACCCAAGTTGCACAAACTCCCCAGCTGAATTTCTCAAGTACTGCTGTTGCACCACCTCCTTTGAGAACTTTTGATCCTCAAACTCCTCCCGTGCTCAGAAATGTGGAGCAGTATCAGCAGCCCACATTGGGTTCTCAGTTGTATAATACAACCACCAATCCACCTTACCAGCCTACACCCTCTGCTACATCACAAGTGGGCTTGGGTCATGGCCACAACCTGTCTCAAGTTGCTGCCCCTACACCAAATCCGATGGGATTCATGCCAGTCCCCAGTTCTGGTGGTGTCCAAAGACCTGGGGTGGGATCAATACAACCACCCAGTCCCCCTCAAGTGCAACCTGTGCAACCAGCTGCTGCACCACCCGCTCCACCTCCAACTCTGCAGACTGCTGATACTTCAAAAGTACCTGGGCATCAAATGCCTATTGTCACAACATTAACAAGACTCTTCAACGAGACATCAGATGCCCTGGGAGGTTCCCGTGCAAACCCATCAAAGAAGCGGGAGATAGAAGACAACTCGAAGAGACTTGGTGGGTTGTTTGCCAAGTTGAATAGTGGAGACATTTCCAAAAATGCTTCTGATAAGCTCCTTCAGCTTTGTCAGTCATTAGACAATGGTGATTTTGGTACAGCCTTACAAATTCAGGTTCTTCTCACTACTACCGAGTGGGATGAATGCCAATCCTGGTTAGGTTCACTCAAGCGAATGATCAAGACAAGGCAGAGCGTGAGACTAAGTTAA 3354 0.4538 MACIKGVNRSASVALAPDAPYLAAGTMAGAVDLSFSSSANLEIFKLDFQSDDSELPVVAECPSSDRFNRLTWGKNGSGSEGFGLGLVAGGLVDGNIDIWNPLTLIRSESSQSSLVGHLVRHKGPVRGLEFNVIAPNLLASGAEDGEICIWDLVNPSEPTHFPPLKSTGSASQGEISFLSWNSKVQHILASTSYNGTTVVWDLKKQKPVISFADSVRRRCSVLQWNPDVATQLVVASDEDGSPSLRLWDMRNIISPIKEFSGHTRGVIAMSWCPNDSSYLLTCGKDSRTICWDMISGEIAYELPAGTNWNFDVHWYPKIPGVISASSFDGKIGIYNIKGCRQSGAGENDYSAVPLRAPKWYKRPAGVSFGFGGKLVSFHPRASSTGSPGSGASEVYVHNLVTENGLVSRSSEFEAAIQNGERSLLRVLCDKKSQESESEEERETWGFLKVMFEDDGTARTKLLSHLGFNVPSEAKEVNDDLSQEVNALGLEDRTVDNAGHVANNESVNFSTDNGEDFFNNLPSPKADTPLSTSAGTFVVAENANGSEKIQDDAEMEESSDPSFDDSVQHALVVGDYKGAVMQCISANKWADALVIAHVGNASLWESTRDQYLKMVRSPYLKIVSAMVSNDLLSLVNTRPLKFWKETLALLCSFAQRDEWTMLCDTLASKLMGAGNTLAATLCYICAGNIDKTVEIWSRCLSNEYEGKSYVDLLQDLMEKTIVLALATGQKRFSASLCKLVEKYAEILASQGLLTTAMEYLKLLGSEELSPELTILKDRIALSTEPEKEFKTAAFENTQAHGGSYYGADNSNYNRNYYQESVPPQVQHGVSGIQYPDSYQQPFDPRYGRGYGAPTPPQQPQQPNLFVPPQTTQVAQTPQLNFSSTAVAPPPLRTFDPQTPPVLRNVEQYQQPTLGSQLYNTTTNPPYQPTPSATSQVGLGHGHNLSQVAAPTPNPMGFMPVPSSGGVQRPGVGSIQPPSPPQVQPVQPAAAPPAPPPTLQTADTSKVPGHQMPIVTTLTRLFNETSDALGGSRANPSKKREIEDNSKRLGGLFAKLNSGDISKNASDKLLQLCQSLDNGDFGTALQIQVLLTTTEWDECQSWLGSLKRMIKTRQSVRLS 1117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02774 1117 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 118 152 - -
Vimu5g02774 1117 ProSiteProfiles Trp-Asp (WD) repeats profile. 259 301 IPR001680 GO:0005515
Vimu5g02774 1117 FunFam Protein transport protein SEC31 homolog B 1 337 - -
Vimu5g02774 1117 MobiDBLite consensus disorder prediction 972 997 - -
Vimu5g02774 1117 FunFam Protein transport protein SEC31 homolog B 1001 1115 - -
Vimu5g02774 1117 FunFam Protein transport protein SEC31 homolog B 353 782 - -
Vimu5g02774 1117 PANTHER SEC31-RELATED PROTEIN 3 1112 IPR040251 GO:0006888
Vimu5g02774 1117 MobiDBLite consensus disorder prediction 948 1006 - -
Vimu5g02774 1117 ProSitePatterns Trp-Asp (WD) repeats signature. 138 152 IPR019775 -
Vimu5g02774 1117 Pfam Sec23-binding domain of Sec16 566 761 IPR024298 -
Vimu5g02774 1117 ProSiteProfiles Trp-Asp (WD) repeats profile. 118 152 IPR001680 GO:0005515
Vimu5g02774 1117 Gene3D - 1 337 IPR015943 GO:0005515
Vimu5g02774 1117 Gene3D Functional domain of the splicing factor Prp18 1005 1116 - -
Vimu5g02774 1117 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 259 293 - -
Vimu5g02774 1117 SMART WD40_4 111 151 IPR001680 GO:0005515
Vimu5g02774 1117 SMART WD40_4 161 201 IPR001680 GO:0005515
Vimu5g02774 1117 SMART WD40_4 295 335 IPR001680 GO:0005515
Vimu5g02774 1117 SMART WD40_4 204 248 IPR001680 GO:0005515
Vimu5g02774 1117 SMART WD40_4 54 100 IPR001680 GO:0005515
Vimu5g02774 1117 SMART WD40_4 252 292 IPR001680 GO:0005515
Vimu5g02774 1117 Gene3D - 353 782 - -
Vimu5g02774 1117 SUPERFAMILY WD40 repeat-like 12 337 IPR036322 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02774 118 352 Miscellaneous Gene Families AT5G08390 22.363 1.40e-10 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02774 K14005 - gmx:100788642 1991.47