Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02742 ATGGAAATTCTCTCGTATAGATCTGGACCATGCTGTCAAGTGGTGAACTTGCAGAGGAAATCGGATGACAAATGTTCGAATTCACCTCATTCTAGGATTCCCATTTTCAGAGAGCGTGGAGTTTCTTATACCAATACCATTTCTAGAAGAGGATCAGTGAGATTTCATGATAATAAGGAGCAGCAAAGAGATTTGGTTGTGTCTCTGACTGTTCTTGAAGGGTCCAAAAGAATCAATTGCAGGGCCTACAGTGATAGATACGAGGGCTATGTGATCGATGGTGAGAAGGATTTAACAGATATTTCGGGGATAGAAGAGTCTGCAACTAGGAATATTCTCATTCCAGGTTTGCCAGATGGGTCAAACGGTGAATGTGGTGCTCCGATAAGTAGTTGCTTTTGGGAATGGAGGCCTAAGCTCAACGTTCACTATGATAAGGCAGGGTGTGAGAACGTGGATTCTCCACCTGTTGTGTTTCTTCCTGGTTTTGGTGTTGGCTCTTTCCATTATGAAAAGCAACTGAGAGATTTGGGGCGTGATAATAGAGTATGGGCACTGGATTTTCTAGGCCAAGGATTGTCCTTGCCCTTTGAAGATCCTGCTCCTCACTATAACAAGGAAGGACATACTTCAAATGGAAATGCTTCTTCATGGGGTTTTGGAGATGAAACGGAACCTTGGGCCACTAATCTTGTATACTCCATTGATTTATGGCATGACCAAGTTCGATACTTCATAGAAGAGGTCATTGGCGAAGCAGTGTACATTGTGGGAAACTCACTAGGAGGATATGTTGCATTGTATTTTGCGGCACGTAACCCTCATTTAGTGAAAGGTGTCACACTTCTTAATGCAACACCCTTTTGGGGGTTTCTTCCTAATCCAATAAAGAATCCACTCCTAGCAAAAATTTTTCCTTGGGCTGGAACATTTCCCTTACCAGCAAGTGTAAGAAAACTGACAGAGTTGGTGTGGGAGAAAATCAGTGATCCTGCAAGTATTGCAGAGGTACTTAATCAGGTTTATGCAGACCATTCAACGAATGTAGATAGTTTAATTTCACACATTGTAGAAACCACACGGCATCCTGCAGCATCAGCTGCTTTTGCTTCAATTATATGTCGAAGAATGAATGTGCCAATGTGCCTGATGTACGGGAGAGAAGATCCGTGGGTAAAGCCACTTTGGGGAGTCCAAGTTAAAAGCAAGGTGCCTGAAGCTGCATATTATGAAATAAGCCCTGCTGGTCACTGCCCTCATGATGAAGTGCCTGAGGTGATAAATTTCTTGGTACGTGGTTGGATGAGAAATGTAGAATCTCAAGGTTCTATCTCACTGCCACTGCTTGATGACTTAGTCTCTGTGAAAGAAGGTAATGTGTGGGAGTTAGAATTTTTGAGAGAAGGTTCAAGAAAATCAGCCATGGTGAGATTCTACGGCTCCAGAATCTCCCTTTTGGACAGAATAAGATCTTACATCGACAACCCGAAATTCAGCAGCTAA 1503 0.4285 MEILSYRSGPCCQVVNLQRKSDDKCSNSPHSRIPIFRERGVSYTNTISRRGSVRFHDNKEQQRDLVVSLTVLEGSKRINCRAYSDRYEGYVIDGEKDLTDISGIEESATRNILIPGLPDGSNGECGAPISSCFWEWRPKLNVHYDKAGCENVDSPPVVFLPGFGVGSFHYEKQLRDLGRDNRVWALDFLGQGLSLPFEDPAPHYNKEGHTSNGNASSWGFGDETEPWATNLVYSIDLWHDQVRYFIEEVIGEAVYIVGNSLGGYVALYFAARNPHLVKGVTLLNATPFWGFLPNPIKNPLLAKIFPWAGTFPLPASVRKLTELVWEKISDPASIAEVLNQVYADHSTNVDSLISHIVETTRHPAASAAFASIICRRMNVPMCLMYGREDPWVKPLWGVQVKSKVPEAAYYEISPAGHCPHDEVPEVINFLVRGWMRNVESQGSISLPLLDDLVSVKEGNVWELEFLREGSRKSAMVRFYGSRISLLDRIRSYIDNPKFSS 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02742 500 FunFam Pheophytinase, chloroplastic 125 438 - -
Vimu5g02742 500 SUPERFAMILY alpha/beta-Hydrolases 128 437 IPR029058 -
Vimu5g02742 500 Pfam Alpha/beta hydrolase family 157 426 IPR000073 -
Vimu5g02742 500 Gene3D alpha/beta hydrolase 130 442 IPR029058 -
Vimu5g02742 500 PANTHER PHEOPHYTINASE, CHLOROPLASTIC 1 494 IPR044211 GO:0015996|GO:0080124
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02742 Vimu-Chr5 37094595 37096817 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02742 150 427 Miscellaneous Gene Families AT1G52750 25.253 3.26e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02742 - - var:108339791 970.304