LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu5g02740	ATGAATCAATCAAATTTCAATGTCTCTTCTCAAACTTTTGTTTCAGTAACAGACCACTTACGAAGATCTGCAAACTATAAACCAAACATTTGGAAACATCATTTTCTCCAATCACTTTACAGTAAATATCATAAGGAAGAATTTGTTATGGTGTTAAACAAGCTTGTGATGGAAGTGAAGAGTCTATTTGCACAAGAAACGAGTATTTTGAAACAACTAGAGTTGGTTGATTGGATCCAAAAACTAGGCCTTGCCAACTATTTTCAGAAGGAAATCAATGGCTTTCTTGAATCTATCAATCTTAGTGAAGAACAAGATTTGCACGTATCTGCTTTATGCTTCAGGCTTCTCAGAAATCACGGATATGCAGTTTTGCCTGATATGTTAAGCAAGTTCTTAGATAAAAATGGTAAAGTGAAGAGGACAATCAGCTCACATGCTGGAGATGTTAAGCATGTTGTGGAGCTTCTTGAGGCCTCACATTTAGGATTGGAAGGAGAAAAGATACTGGATAAGGCAAAAATCTGTGCCATAAATTCTCTGAAGGATACTTTTTCTGTCAGTTCCATCAAGGACCAACTATCTGATACTGTAGATGCTGAAAGAGTGGTCCATTCTCTGGAGCTTTCATCCCATTGGAGAGTACAGTGGTTTGAAGTGAAATGGCATGTGAAGCAATACAGCAAGGAGAAAAATATGAATCATGTTTTACTTGAACTATCGAAATTAAATTTCAATATGATTCAAGCAACACTTCAGTTGGAGTTAAAGGAATTATCCAGGTGGTGGGAAAATCTTGGCATAAAAGAAGAATTGAGCTTTGCAAGGAACAGGTTGGTTGAAAGCTTCATGTGTGCAGCAGGAGTTGCTTTTGAGCCAAAGCACAAATCCATCAGAAAATGGCTCACTAAAGTTATTGTTTTCGTACTGGTCATTGATGATGTTTATGATATACATGCCTCGTTTCAAGAGTTGAAGCCCTTCACAATGGCATTTGAGAGATGGGACGACACAGAAGTTGAAGAACTTCCAACGTACATGAAAACTTGCGTCAATGCACTGAAAGATGTTACAAATGAAATTGCTTATGAGATTGGTGGAGAAAATAACTTTCACTTGGTGTTACATTACCTAAAGAAAGCGGCTGAGAGAGAAAGAGGTGATGCTGCTTCATCAATAGTATGCTATATGAAGGAAGAAGGTGTTTCAGAGGAAAAAGCAAGAAAGCATATAGAAGATAAAATCATTGAAGCATGGAAGAAGATAAACAAGTGTTATGGTTGTTGTTCTTCATGTTGGGTGGAACCATTTCTTACTCAAGCAATAAATGCAGCTCGTGTGGGTCATACCCTTTATCAAAATGGAGATGGTTTTGGAATCCAAGATCGAGATATCAAAAAACATATCTTGTCACTAGTTGTTGAACCTCTTTAA	1434	0.371	MNQSNFNVSSQTFVSVTDHLRRSANYKPNIWKHHFLQSLYSKYHKEEFVMVLNKLVMEVKSLFAQETSILKQLELVDWIQKLGLANYFQKEINGFLESINLSEEQDLHVSALCFRLLRNHGYAVLPDMLSKFLDKNGKVKRTISSHAGDVKHVVELLEASHLGLEGEKILDKAKICAINSLKDTFSVSSIKDQLSDTVDAERVVHSLELSSHWRVQWFEVKWHVKQYSKEKNMNHVLLELSKLNFNMIQATLQLELKELSRWWENLGIKEELSFARNRLVESFMCAAGVAFEPKHKSIRKWLTKVIVFVLVIDDVYDIHASFQELKPFTMAFERWDDTEVEELPTYMKTCVNALKDVTNEIAYEIGGENNFHLVLHYLKKAAERERGDAASSIVCYMKEEGVSEEKARKHIEDKIIEAWKKINKCYGCCSSCWVEPFLTQAINAARVGHTLYQNGDGFGIQDRDIKKHILSLVVEPL	477

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu5g02740	477	Gene3D	Farnesyl Diphosphate Synthase	248	382	IPR008949	-
	Vimu5g02740	477	SUPERFAMILY	Terpenoid cyclases/Protein prenyltransferases	27	232	IPR008930	-
	Vimu5g02740	477	Gene3D	Farnesyl Diphosphate Synthase	383	477	IPR008949	-
	Vimu5g02740	477	SUPERFAMILY	Terpenoid synthases	234	477	IPR008949	-
	Vimu5g02740	477	Gene3D	-	31	247	IPR036965	GO:0010333\|GO:0016829
	Vimu5g02740	477	Pfam	Terpene synthase, N-terminal domain	30	198	IPR001906	GO:0010333\|GO:0016829
	Vimu5g02740	477	PANTHER	OS04G0344100 PROTEIN-RELATED	383	457	-	-
	Vimu5g02740	477	Pfam	Terpene synthase family, metal binding domain	238	382	IPR005630	GO:0000287\|GO:0010333\|GO:0016829

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu5g02740	Vimu-Chr5	37079509	37083730	Transposed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu5g02740	K14173		-	gmx:100812119	555.829