Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02738 ATGGATGGTTACGAAGCTACACGAATTGTGTTCTTAAGGGTCCAAACTTTGGACCCAGAAAATGCTTCCAAAATCATGGGTTTGCTTCTGCTTCAAGACCATGGTGAAAAGGAAATGATTAGATTAGCATTTGGTCCAGAAGCACTTGTTCACTCAGTGATTGTTAAAGCCCGCAAGGAGTTAGGTTTACCTTTGAACTCTCCGCCAACACCCTCCACTCCTCCTTCTCCTTCACCCTTCCTTCCGAGGCAGAACTCTACTTCTTCAAGGCTCGGTGGTATCAGCCTCCCTCCTGCTCTCACCATTCCAAACCCTTCTTCTACTTCTTCTTCATGGCCTACTATGTCTGAGCTTCAAACCCCTGATAGTTTGATGAGCCCCAACAATTTGGTTGTTGGCTCTTCTACTTCTTCATCCTCCTTATCCTTTTATGCAAATGGAGGCTCAGATCCAATTGATGACTTCCAACTTCAAGACCAGCTCTCTTTTCTGAATGATGGTTCTGCTCCTGCTCACAAAAACAACCCTGATTTGTTTTACCCTTGTCACTCGGACTTGTCTTCAAGTCCTACTGCTGCTTCTGACCCTACCCTCTTTCCTTCCTTCGATTGGGGAGGGTCTCTTCACCGCAGGAGTTGTTCTGTCAATGATGTTTGTTTGGGCTCTGAGGACTCCAATTCCGGGTTGGGGTGGAAGCCTTGTCTGTACTTTGCTAGGGGATACTGTAAAAATGGCACTAGTTGCAGGTTCCTTCATGGTGGACTTGGAGATGCTGATGCTGCTGCTCCTGCTGCAATGGTTGGGTCTCCTAGCAAGCTTGAGATGATGGAGCAGTGCCATGAGCTTTTCAGAGCTAAGTCCTCACAACAGCAGAGACTTGCTGCTGCTTCTCAGTTCATGGCCTCTTCTACTTTTCCATACACCCCAAAGTGCATGAATTTGCTGTTGCAGCAGCAACAGAATGATACTCAAAGAGCTGCAGCTCTGATGATGAGTGAGGATTTGCATAAATTTGGACGATCCAGGCTTGAAAGAAATGATTTTTCTCTGAACAGTCCAGGAATTGTAAACCCAGCTTCCAGGCAGATCTACTTGACTTTCCCAGCAGATAGCACTTTCAGAGAGGAAGATGTTTCAAATTACTTCAGCATTTATGGCCCAGTCCAAGACGTGAGGATCCCATACCAGCAGAAGAGAATGTTTGGCTTTGTTACCTTTGTTTACCCGGAGACTGTGAAGCTTATTCTATCTAAAGGAAATCCTCATTTTGTGTGTGATGCTCGAGTGCTTGTTAAGCCTTACAAGGAGAAGGGCAAAGTCCCGGACAAGAAGCAGCAGCAGGTAGATAGAGGGGATTTTTCACCAAGTGGTACTCCTACTGGACTAGATGCTAGAGACCAATTTGATCTTCAACTTGGAGGCAGAATGTTCTACAATACTCAAGACATGCTGTGGAGGAGGAAGCTGGAGGAGGAAGCTGATTTGCAGCAAGCTCTAGAGCTCCAAAGTAGGAGGCTAATGGGCCTGCAGCTTCTTGACATCAAGAAGCATCACCAGCGTGCACTCTCCACCGGAAGTCCAATTCCTTCCCCAGCACACTCTCTTAACATGTTCAACCAAAATCTTGTTCTTCCTTCTTTTCACAATATTTCCGAGGCCCCAAAGGAGAATGGTTCAACTTCTGCTCCACCTAGTACTGCTTCAGTTTCTGCTGGTCTGCAATCTGTCAACGTTTCTGTTGGCAAGGAAGTGGTGGTCAATGGCGAGAATGGATTGAATGAAGGCAATGACAAGCAGAACTCTGGTCATGAAGATATTGATTTGCAAGAATGCTCGGAGCATAATCTCCCTGATAGCCCTTTTGCTTCCCCAACAAAAGCTGCTGGAGACTTGATGGTTTCCTTCTCTAATGGAACTGTTGAGGCCATTGACACAGATGCCTCGGGTGCATCTGTCAACTCCAAATTTGGTACTAGTGCATTGCTTCCACCAGCATCTGCAATTGACATGGGGACTTTCAAATCCTATAACTGTCAAATACCAAGGTTCCCTTCTGGCCATGGAACTTTTGGGATGTTCCCGGGCACGGGTGGCCCGATTGGCATTTAG 2109 0.4647 MDGYEATRIVFLRVQTLDPENASKIMGLLLLQDHGEKEMIRLAFGPEALVHSVIVKARKELGLPLNSPPTPSTPPSPSPFLPRQNSTSSRLGGISLPPALTIPNPSSTSSSWPTMSELQTPDSLMSPNNLVVGSSTSSSSLSFYANGGSDPIDDFQLQDQLSFLNDGSAPAHKNNPDLFYPCHSDLSSSPTAASDPTLFPSFDWGGSLHRRSCSVNDVCLGSEDSNSGLGWKPCLYFARGYCKNGTSCRFLHGGLGDADAAAPAAMVGSPSKLEMMEQCHELFRAKSSQQQRLAAASQFMASSTFPYTPKCMNLLLQQQQNDTQRAAALMMSEDLHKFGRSRLERNDFSLNSPGIVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKLILSKGNPHFVCDARVLVKPYKEKGKVPDKKQQQVDRGDFSPSGTPTGLDARDQFDLQLGGRMFYNTQDMLWRRKLEEEADLQQALELQSRRLMGLQLLDIKKHHQRALSTGSPIPSPAHSLNMFNQNLVLPSFHNISEAPKENGSTSAPPSTASVSAGLQSVNVSVGKEVVVNGENGLNEGNDKQNSGHEDIDLQECSEHNLPDSPFASPTKAAGDLMVSFSNGTVEAIDTDASGASVNSKFGTSALLPPASAIDMGTFKSYNCQIPRFPSGHGTFGMFPGTGGPIGI 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02738 702 MobiDBLite consensus disorder prediction 550 570 - -
Vimu5g02738 702 MobiDBLite consensus disorder prediction 82 126 - -
Vimu5g02738 702 CDD RRM_AtC3H46_like 363 432 IPR034365 -
Vimu5g02738 702 Gene3D - 222 312 - -
Vimu5g02738 702 Gene3D - 360 459 IPR012677 -
Vimu5g02738 702 SUPERFAMILY RNA-binding domain, RBD 373 448 IPR035979 GO:0003676
Vimu5g02738 702 SMART c3hfinal6 230 254 IPR000571 GO:0046872
Vimu5g02738 702 MobiDBLite consensus disorder prediction 63 126 - -
Vimu5g02738 702 FunFam zinc finger CCCH domain-containing protein 53-like isoform X2 368 439 - -
Vimu5g02738 702 ProSiteProfiles Zinc finger C3H1-type profile. 228 255 IPR000571 GO:0046872
Vimu5g02738 702 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 627 - -
Vimu5g02738 702 MobiDBLite consensus disorder prediction 67 81 - -
Vimu5g02738 702 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 361 437 IPR000504 GO:0003723
Vimu5g02738 702 SMART rrm1_1 362 432 IPR000504 GO:0003723
Vimu5g02738 702 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 233 253 IPR000571 GO:0046872
Vimu5g02738 702 SUPERFAMILY CCCH zinc finger 231 253 IPR036855 GO:0046872
Vimu5g02738 702 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 373 418 IPR000504 GO:0003723
Vimu5g02738 702 MobiDBLite consensus disorder prediction 436 461 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02738 Vimu-Chr5 37062315 37065199 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02738 - - gmx:100801341 1074.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02738 5 37062315 37065199 Vimu5g02738 5 37062315 37065199 ECH