Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02733 ATGAGATACTCTTATTCACCTCGTAGCCTCGTTGTAGAACACAACATTCTGTTCCTCAGAGGCTTCACCATACTGTTCATTAGTTGCATAGCTGTTCGGCTTGATCTGGGTCTTTCCAGCATCCCCTCTTCGCTGAAATCACTTCCCCTTGGAGGGCATTTAAATTTTGATGAACTTAGCCTTAGGAATGCAGCCAGAGACTTTGGAAATAGGTATCAGTATCATCCAATGGCAGTACTGCATCCAGAATCAGTTTCTGATATTGCAGCCACCATAAAACATGTCTGGATGAGGGGTCCGAGTTCACACCTAACGGTTGCAGCGAGGGGCCACGGCCACTCACTCCAGGGCCAGGCTCAAGCTCATGGAGGAATTGTGATCAACATGGAATCACTCAAGGTCCCAAAAATGCAGGTACACGTAGGAAATTTTCCTCCATACGTGGATGTTTCAGGTGGCGAATTGTGGATAAACATCTTGCATGAGACTCTGAGATACGGGTTGGCGCCAAGATCGTGGACAGACTACCTGCATCTGACAGTTGGTGGCACTCTCTCCAACGCTGGTGTCAGTGGCCAGGCATTTAAGCATGGTCCCCAGATAAGTAATGTTCAGCAGCTGGAGATTGTTACAGGAACAGGGGAGGTGGTGAACTCTTCCGCTGAGCATAATGGAGAACTCTTTCACAGTGTTCTTGGGGGACTTGGCCAGTTTGGCATTATAACCAGAGCAAGAATTGTCCTTGAACCAGCACCTGCCATGGTGAAATGGATTAGAGTGTTGTACTCGGATTTCACGGCATTCACAAGAGACCAAGAGCTGTTAATATCTTCAGAAAACACGTTTGACTACATTGAAGGATTTGTTATAATAAACAGAACTGGTCTGCTAAATAACTGGAGATCATCCTTCAACCCACAAGACCCAGTTCAAGCTAGTCATTTCAAGTCTGATGGAAGAACCCTCTTCTGCCTTGAATTGGCTAAATACTTTAACGTGGAAGAAATTGATGCTGCAAACCAGGAAGTTGAGGAACATTTGTCCCGTTTAAGCTACATCCAATCGACCCTTTTTTCAACAGAAGTTACATTTGTAGATTTCTTAGACAGGGTGCACGTATCTGAGGTGAAATTGCGTTCAAAAGGGTTGTGGGATGTTCCACATCCGTGGCTAAATCTTCTGATACCCAGAAGCAAGATACACAACTTCGCAGAAGTGGTCTTCGGGAATATCCTGACAGAAACTAGCAACGGCCCCGTCCTTATCTACCCGGTGAACAAATCAAAGTGGGACAACAGAACTTCTGTTGTGATTCCAGAGGAAGATATTTTCTACTTAGTGGCATTTCTAACTTCTGCAGTTCCCTCTTCCAATGGAACTGATGGCTTAGAATACATTCTAAGTCAGAACAAAAGAATTTTAGAATTCTGCCAAAGAGCACAACTTGGAGTGAAGCAGTATTTGCCCCACTACAACACACAGCAAGAATGGAGGGCCCATTTTGGTCCTCAATGGGAAACTTTTCTGCAGAGAAAGTCTGTTTATGATCCATTGGCAATACTAGCTCCTGGCCAACGCATATTTCAAAAAGCAATAACCTTCTCATGA 1608 0.4471 MRYSYSPRSLVVEHNILFLRGFTILFISCIAVRLDLGLSSIPSSLKSLPLGGHLNFDELSLRNAARDFGNRYQYHPMAVLHPESVSDIAATIKHVWMRGPSSHLTVAARGHGHSLQGQAQAHGGIVINMESLKVPKMQVHVGNFPPYVDVSGGELWINILHETLRYGLAPRSWTDYLHLTVGGTLSNAGVSGQAFKHGPQISNVQQLEIVTGTGEVVNSSAEHNGELFHSVLGGLGQFGIITRARIVLEPAPAMVKWIRVLYSDFTAFTRDQELLISSENTFDYIEGFVIINRTGLLNNWRSSFNPQDPVQASHFKSDGRTLFCLELAKYFNVEEIDAANQEVEEHLSRLSYIQSTLFSTEVTFVDFLDRVHVSEVKLRSKGLWDVPHPWLNLLIPRSKIHNFAEVVFGNILTETSNGPVLIYPVNKSKWDNRTSVVIPEEDIFYLVAFLTSAVPSSNGTDGLEYILSQNKRILEFCQRAQLGVKQYLPHYNTQQEWRAHFGPQWETFLQRKSVYDPLAILAPGQRIFQKAITFS 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02733 535 ProSitePatterns Oxygen oxidoreductases covalent FAD-binding site. 76 111 IPR006093 GO:0016491
Vimu5g02733 535 FunFam Cytokinin dehydrogenase 2 254 487 - -
Vimu5g02733 535 Gene3D - 62 528 IPR016167 -
Vimu5g02733 535 Pfam FAD binding domain 76 218 IPR006094 GO:0050660
Vimu5g02733 535 SUPERFAMILY FAD-binding/transporter-associated domain-like 50 250 IPR036318 GO:0050660
Vimu5g02733 535 SUPERFAMILY FAD-linked oxidases, C-terminal domain 252 528 IPR016164 GO:0003824|GO:0050660
Vimu5g02733 535 Gene3D - 254 487 IPR016170 -
Vimu5g02733 535 PANTHER GULONOLACTONE OXIDASE 22 529 - -
Vimu5g02733 535 ProSiteProfiles PCMH-type FAD-binding domain profile. 72 251 IPR016166 GO:0071949
Vimu5g02733 535 Pfam Cytokinin dehydrogenase 1, FAD and cytokinin binding 252 528 IPR015345 GO:0009690|GO:0019139|GO:0050660
Vimu5g02733 535 Gene3D - 129 253 IPR016169 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02733 Vimu-Chr5 37027606 37029593 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02733 K00279 - gmx:100808619 994.186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02733 5 37027606 37029593 Vimu5g02733 5 37027606 37029593 ECH