Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02722 ATGCTACTATTTGGGTCATTTACTGAAGATGAAACCCGATCACTGCTGTCAAAGCAGTCTTCTGGGAAAAATGAAAAGCCTGTGGAGAAGAATCAGCTGCAGTTTGGATCTCTGAATTCTGTTACTGTTGAGTCAAACAACCTGCAAAACTCATCAAAGGCATCAGTTAGTGCTCCGCCCTCTGATTCTCAGAAATGTAATGGAGTGAAAAATGATAATGATAGTTCATCTGAAGTTCCAGGAGCAATTAAAGAGAATGGCAGCATTACCAATTTCTCCCCTAGCCCCACGAGTACGAGTAGTGTGAATGAAGTTGACGAGAAAAATGCAAATTCTTTTACATTACTTGATGAAGATGGTCCCTCAAACAAGTTTTCAAAATTGAGCCTAGATGCTTCCGAGACTGAAAACTCGAGGAATGTACATAAAACTGGCAATGGAGATGATTCTTCATTAAAGTTCTCCCATCGAGAACCCGCAAAGGCACCTAACGGGCATGCTGTTCTGCCTGTTAAAGACATACTGCCTCGAGGCCTTATCAACTCTGGGAATCTTTGCTTTCTTAATGCAACCGTGCAGGCCCTGTTGTCATGCTCACCTTTTGTTCATCTTTTACAGCAATTAAGAACTCGCAACCTTCCTAAGGTTAGTCTGTCTGCTGCTGCCATCTAG 672 0.4241 MLLFGSFTEDETRSLLSKQSSGKNEKPVEKNQLQFGSLNSVTVESNNLQNSSKASVSAPPSDSQKCNGVKNDNDSSSEVPGAIKENGSITNFSPSPTSTSSVNEVDEKNANSFTLLDEDGPSNKFSKLSLDASETENSRNVHKTGNGDDSSLKFSHREPAKAPNGHAVLPVKDILPRGLINSGNLCFLNATVQALLSCSPFVHLLQQLRTRNLPKVSLSAAAI 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02722 223 SUPERFAMILY Cysteine proteinases 170 214 IPR038765 -
Vimu5g02722 223 Gene3D Cysteine proteinases 168 220 - -
Vimu5g02722 223 MobiDBLite consensus disorder prediction 10 104 - -
Vimu5g02722 223 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 178 193 IPR018200 GO:0004843|GO:0006511
Vimu5g02722 223 Pfam Ubiquitin carboxyl-terminal hydrolase 178 211 IPR001394 GO:0004843|GO:0016579
Vimu5g02722 223 MobiDBLite consensus disorder prediction 124 164 - -
Vimu5g02722 223 MobiDBLite consensus disorder prediction 1 104 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02722 K11841 - gmx:100799656 336.65