Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02720 CACAACACAACACAATTATTAACCTCAAACCTTAACAAAACATTTCCCTCATCAACAAGGAATCACTCTCTGTCTCTCTCTGTTTCTCTTTCTCTCTCTTTCATTCTTTCTATAATTCCTCTGTTTTGTTTTCATCACAACGCTCCTTCTCTGTCAGCCGTTATATTTGCTGCAATGAATACGCTCCTTCCCCAAACTCATCTTTCCCCTCCAATGAATTCAAAATCCAAACTTTGGACAAACCCAACTTCAACATCAACCAGCTGTAGCAATAGCAGCAGCAGCAGCAGCATCAGCAGCGAGAACGATGACAGCCCCTTTTGTTCCCAACGCATACCCATCGTTGTTTCTGCCTTCTTCAATTCTCACCGATCACTCGCTGTTCTCTCCGGACACGTGGGTTCCGTTTCATGCTTGGCCCTATGCGGTGAGTTCATCCTGAGTGCCTCTCAGGGTAAGGATATCATAGTCTGGCAGCAACCGGACTTGAGGGTCTTTGCAAAGTTCGGACAAGGAGAGGGGTCGGTGAAAGCACTTGCAACGGTTGGCAACAAGGTTTTCACCGCACATCAAGATAGCAGGATCAGAGTTTGGAAGGTGTCAAGAAGCTCGGAGAACGTGTTCAAGCTTGTCGATTCTCTTCCCACGACCAAGGACTATCTGGGGAAGTTCATGAAGCAGAGCAACTATGTCCAAACCCGGAGGCACCACAAGCGTTTGTGGATTGAGCATGCAGATAGCATTTCTTGCTTGACGGTTTATAACGGGTTGATTTATTCTGGTTCGTGGGATAAGACTCTGAAGGTGTGGAAGCTCTCTGATTTGAAGTGTTTGGAGTCGATTAAGGCTCATGATGATGCAATCAATGGGCTGGTGGCGTGTAAAGGGGTGGTGTATTCTGCTTCTGCTGATGGAAAGATTAAAGCTTGGGGGAGAAAAGAGGGGAAGGGGGACCATTGCTTGAAGGGGGTTTTGGAGGGTCATAAGGATGTTTCGTTCAATGCTATTGTTGTTTCTGAGGATGGGAAATGGGTTTATGGAGGAGGATCCGATGGGTTTGTGATGGGGTGGGAGGGGAGTGGAGGTTCTGAGAGTTGGAAGCTGGTTTCGGAGACCAAGGCACATGAGATGGCTGTGTTGTGCATGTGTCTGATGGGGGAGTTTTTGTGCAGTGGATCAGCAGATAAAAGCATAGGGATTTGGAGAAGGGAGGCTTTTGGTAAGCTTTGTAAAGTTGGTGTCATAAATGGCCATGAAGGGCCTGTGAAGTGTTTGCAAGCTTCATCATCTAGTAGGATTGGTGGTGGTTTTTTATTGTACAGCGGAAGCCTTGACAAAAGTGTGAGAGTTTGGTGGGTTCCAAGGTATAATGATGCAGAAGTAGAGGACAATAGCTCTACACAATTTGGCACAGAGAATAAGTTCATGCTAGCATAA 1437 0.4642 HNTTQLLTSNLNKTFPSSTRNHSLSLSVSLSLSFILSIIPLFCFHHNAPSLSAVIFAAMNTLLPQTHLSPPMNSKSKLWTNPTSTSTSCSNSSSSSSISSENDDSPFCSQRIPIVVSAFFNSHRSLAVLSGHVGSVSCLALCGEFILSASQGKDIIVWQQPDLRVFAKFGQGEGSVKALATVGNKVFTAHQDSRIRVWKVSRSSENVFKLVDSLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWKLSDLKCLESIKAHDDAINGLVACKGVVYSASADGKIKAWGRKEGKGDHCLKGVLEGHKDVSFNAIVVSEDGKWVYGGGSDGFVMGWEGSGGSESWKLVSETKAHEMAVLCMCLMGEFLCSGSADKSIGIWRREAFGKLCKVGVINGHEGPVKCLQASSSSRIGGGFLLYSGSLDKSVRVWWVPRYNDAEVEDNSSTQFGTENKFMLA 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02720 478 PRINTS G protein beta WD-40 repeat signature 258 272 IPR020472 -
Vimu5g02720 478 PRINTS G protein beta WD-40 repeat signature 186 200 IPR020472 -
Vimu5g02720 478 PRINTS G protein beta WD-40 repeat signature 439 453 IPR020472 -
Vimu5g02720 478 Pfam WD domain, G-beta repeat 243 271 IPR001680 GO:0005515
Vimu5g02720 478 Pfam WD domain, G-beta repeat 412 451 IPR001680 GO:0005515
Vimu5g02720 478 Pfam WD domain, G-beta repeat 323 357 IPR001680 GO:0005515
Vimu5g02720 478 Gene3D - 115 227 IPR015943 GO:0005515
Vimu5g02720 478 SMART WD40_4 162 199 IPR001680 GO:0005515
Vimu5g02720 478 SMART WD40_4 318 358 IPR001680 GO:0005515
Vimu5g02720 478 SMART WD40_4 234 271 IPR001680 GO:0005515
Vimu5g02720 478 SMART WD40_4 365 402 IPR001680 GO:0005515
Vimu5g02720 478 SMART WD40_4 274 311 IPR001680 GO:0005515
Vimu5g02720 478 SMART WD40_4 408 452 IPR001680 GO:0005515
Vimu5g02720 478 SMART WD40_4 122 159 IPR001680 GO:0005515
Vimu5g02720 478 FunFam BnaA09g28200D protein 231 315 - -
Vimu5g02720 478 SUPERFAMILY WD40 repeat-like 123 455 IPR036322 GO:0005515
Vimu5g02720 478 Gene3D - 228 475 IPR015943 GO:0005515
Vimu5g02720 478 ProSiteProfiles Trp-Asp (WD) repeats profile. 241 280 IPR001680 GO:0005515
Vimu5g02720 478 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 74 455 IPR045182 -
Vimu5g02720 478 ProSiteProfiles Trp-Asp (WD) repeats profile. 415 451 IPR001680 GO:0005515
Vimu5g02720 478 CDD WD40 125 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02720 Vimu-Chr5 36954911 36956898 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02720 231 451 Miscellaneous Gene Families AT5G08390 24.454 5.43e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02720 - - gmx:100775295 710.679