Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02705 ATGGCTAGTGCTGCAGTTATTGGACTCAGTGGAGGAAAGAGGCTTTTGGGTTCATTATACCATTACTCTGATATTATAGAAAAGCTTTCTTATGGAAGTGACTTTGGATCCACACAGTATCAGATTGTTTCAACAAAATCTGTGATAGTTGCCAAGAAGTCATCCAATTACACTCCAACTTTTCCAGCATCGAACCGGCAGAATCAGTCCATCAAGGCTCTTAAGGAGCATGTTGATGATGCTGCTACCGTTGCGGAGCCATGGTTTCAGAGTTCCAGTTCTAATGACTTAGATGAGGAAAGCTCTGAAATGGGTTATTCTGTGGAGGCTCTTCTTTTGCTGCAGAAGTCAATGCTGGAAAAGCAATGGAGCCTTTCCTTTGAAAGGGAGGTGCTGACAGAACGTTATAGTAAAGCGAAAATCCGTAGGAAAGTGGCAGCGGTGACATGTTCTGGAGTGTCTGCAAGGCAAAGAAGAATGAATGCCAAGCGGAAGACTGTGGTTAAAGCCTGTGGTGCTGTGCCGCTGAAGTCCAAAATCAGTCCAGAGCGGGTTCAAAACCGTGTGAAGGGTTATGTGAAAGGAGTAGTGAGTGAGGAATTGCTCTCTCATGCAGAAGTTGTTAGCCTATCAGAGAAAATAAAAGTTGGGCTTTCCTTAGAGGAGCATAAATCCGGACTGAAGGAGAGACTGGGATGTGAACCCTCTGACGATGAAATGGCAACTTCATTGAAGATGTCTCGTACTGAACTACGAGAAAAAATGCTAGAGTGCTCTCTGGCAAGAGAAAAGTTGGCTATGAGCAATGTTCGCTTAGTTATGTCTATTGCTCAAAAATATGAAAACGCTGGTGCAGAAATGGGTGACCTTGTTCAGGGTGGCTTGATTGGACTACTTCGTGGTATTGAAAAGTTTGATTCTTCAAAAGGGTTTAAGATTTCAACCTACGTTTACTGGTGGATACGTCAGTTTCACCTGTTGGGAACTGCTATTGTTGTTGGTATAATTGATCAGCTTCACCTATTGGGTGTTATTGTCATTGCTGAAGCAATCAAGTCAAAATTTTACGGTGTTTCAAGAGCCTTAATTGAGAATTCAAGAACATTAAGATTGCCTGCTCATTTGCATGAGAGATTATCTTTAATCCGCAATGCAAAGTTTAGACTAGAAGAGAGAGGCATTACTCCAACTATTGATAGGATTGCAAAACACCTTAACATGTCTCAAAAGAAAGTCAGAAATGCCACTGAGGCAATCAGCAAAACTATCTCGCTTGATAGAGAAGCATTCCCCTCTTTGAATGGTCTACGAGGAGACACTCATCACAGTTACATTGCAGATAATCGCGTTGAGAACATCCCGTGGAAGGGAGTAGATGAGTGGGCACTAAAGGATGAAGTGAACAAACTCATGAATGTGACCCTTAAGGAACGAGAGAGAGAAATTATTCGACTTTATTATGGACTGGGTAAAGAATGTCTTACATGGGAAGACATTAGTAAACGGATGGGTTTATCGAGAGAAAGAGTAAGGCAAGTTGGACTTGTTGCATTGGAGAAACTAAAACATGCTGCAAGGAAGGGAGAATTGGAGGCAATGCTGTTGAAACATTGA 1614 0.4213 MASAAVIGLSGGKRLLGSLYHYSDIIEKLSYGSDFGSTQYQIVSTKSVIVAKKSSNYTPTFPASNRQNQSIKALKEHVDDAATVAEPWFQSSSSNDLDEESSEMGYSVEALLLLQKSMLEKQWSLSFEREVLTERYSKAKIRRKVAAVTCSGVSARQRRMNAKRKTVVKACGAVPLKSKISPERVQNRVKGYVKGVVSEELLSHAEVVSLSEKIKVGLSLEEHKSGLKERLGCEPSDDEMATSLKMSRTELREKMLECSLAREKLAMSNVRLVMSIAQKYENAGAEMGDLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQFHLLGTAIVVGIIDQLHLLGVIVIAEAIKSKFYGVSRALIENSRTLRLPAHLHERLSLIRNAKFRLEERGITPTIDRIAKHLNMSQKKVRNATEAISKTISLDREAFPSLNGLRGDTHHSYIADNRVENIPWKGVDEWALKDEVNKLMNVTLKEREREIIRLYYGLGKECLTWEDISKRMGLSRERVRQVGLVALEKLKHAARKGELEAMLLKH 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02705 537 Gene3D - 453 531 IPR036388 -
Vimu5g02705 537 PRINTS Major sigma-70 factor signature 313 321 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vimu5g02705 537 PRINTS Major sigma-70 factor signature 495 510 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vimu5g02705 537 PRINTS Major sigma-70 factor signature 510 521 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vimu5g02705 537 PRINTS Major sigma-70 factor signature 475 487 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vimu5g02705 537 PRINTS Major sigma-70 factor signature 289 302 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vimu5g02705 537 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 74 323 - -
Vimu5g02705 537 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 187 323 IPR013325 GO:0003700|GO:0006352|GO:0006355
Vimu5g02705 537 CDD Sigma70_r4 464 522 - -
Vimu5g02705 537 Gene3D - 367 419 IPR036388 -
Vimu5g02705 537 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 454 527 IPR013324 -
Vimu5g02705 537 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 370 426 IPR013324 -
Vimu5g02705 537 NCBIfam sigma-70 family RNA polymerase sigma factor 261 323 IPR014284 GO:0003700|GO:0006352|GO:0006355
Vimu5g02705 537 Pfam Sigma-70 region 3 377 448 IPR007624 GO:0003700|GO:0006352|GO:0006355
Vimu5g02705 537 Pfam Sigma-70, region 4 474 523 IPR007630 GO:0003700|GO:0006352|GO:0006355
Vimu5g02705 537 Gene3D RNA Polymerase Primary Sigma Factor 45 325 - -
Vimu5g02705 537 ProSitePatterns Sigma-70 factors family signature 1. 289 302 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vimu5g02705 537 Pfam Sigma-70 region 2 267 323 IPR007627 GO:0003700|GO:0006352|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02705 Vimu-Chr5 36865249 36870001 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02705 K03086 - gmx:100801884 852.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02705 5 36865249 36870001 Vimu5g02705 5 36865249 36870001 ECH