Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vimu5g02704 | ATGGCTGTTGAGACTTCCGATAAACCAAATTTACCTCATGATTTTGACGATGATGATGATGCACCGTTAATTTACAAAAGGATTCCAAGTAAGAAAAACCAAACACATTCAGAAGCAAGGAAGTCTAATTCTCACATTCACGATGGACAGTCATATAGACAGGCTCCTAATGCACCTTCTTCGAATGGCCAGACTTCTAGCTTGCAGAAAGGTAATACTGCCCCATCTCTTAAGCCATCAGCCACGAAGCCTTCTGTAGGTATCTCAAGAACTCCAAATTCTGTTGGCAACACTTCCTCTGTGAAGTTGCCTGTAGCAAATTCAAAATCACCTTCATTGGGAGATAAACAGAAAATGTCCGTTGATGTCAAGGTGGAACCAAAATCTACTGAGCACAGTGGTAAAGGTTTTTGTGAGGATTCAGAAGACGACGAGGATGATAAACCGTTGAGTTTTAGGTTGAAGAATTCTAACCATGATAACAAAGCGACGTCTGTTGTCAAGAAATCTTACGAAGACTCTGATGATGATGATGATGTCCCTTTGGCAAAAAAGTTACCTCGTAATTTGAATTTGGGAACAACTAGCAATAACCACGAAGACTCTGATAAGAAGCCTATTTCTAAAATCCAGAAAGAGCGACAAAATGGTTCTGGCATGAGTAATAAACAGGACAGACCATCTCCATTGCCAGCTAAAAGACCACTAGATAATAGTAATTCCTTGCAACCTTCTATTAAGAAGCCCAAGGTCTCCGCTTCAAATGCATCTATCAAAACTAAGCTAGTCTCTGAGAAACGTGAGCTGAAGACAGAGGATGACGATGATGATGATCATATTCCTATTTCCCAGAGAATAAAGAAACAAGGCATGACAGGTGATAAATCGTCTTCCACGAAGAAGGTGCTTCAAAAAGTTACTAAAGTTAACAAATCTAGTTCAAAACCTTTCAAGAAACAGACCAAGAAGATAGTTAAAAAATCAGGCAGTGGTTCAGAATATTCCAAATCCAGCAAACTTCTTCCTAGCTCTGGTGATGGGCAGAAAAAGTGGACTACTTTGGTTCACAATGGTGTCATTTTCCCCCCTCCTTACCAGCAGCACGGGGTAAAGATACTATATAAGGGGAGACCAGTTGATTTGACCCCCGAGCAAGAGGAGGTTGCTACAATGTATGCAGTCATGCGAGATACGGAGTACATGCAGAAAGATAAGTTCAAGGATAATTTCTGGAATGACTGGCGAAAGTTGCTTGGAAGAAATCATGTAATCCAGAACTTGAAAGACTGTGATTTCACTCCAATATATGACTGGTACCAAGGTGTGAAGGATAAGAAAAAGCAAATGACCACCGAAGAGAAGAAAATTTTGAAGGAAGAGAAAATGAAACAAGAGGAGAAATACATGTGGGCTATTGTAGATGGTGTTAAAGAGAAGGTTGGGAATTTTAGAGTTGAACCACCAGGATTGTTCCGAGGCCGAGGAGAGCACCCCAAGATGGGAAAATTGAAAAGACGCATTCATCCAGGTGACATCACAATTAATATTGGAAAGGATGCCCCAATTCCTGAATGTCCTATTCCTGGTGAAAGGTGGAAGGAGATAAGACATGATAATACAGTTACCTGGTTAGCCTATTGGAGTGATCCTATAAATCCAAAGTTATTCAAGTATGTGTTTCTGGCCGCTAGTAGTTCTTTGAAGGGACAAAGTGACAAGGAAAAGTATGAGAAAGCTAGGATGTTAAAGGATTATATAGAGAACATTAGGTCTGCATACACAAAAGATTTTACCAATAAAGATATTACTAAGCTGCAAATTGCCGTTGCTACTTATCTTATTGATAAACTAGCTCTGAGGGCGGGCAATGAGAAGGATGACGATGAAGCTGATACTGTTGGTTGCTGCACATTAAAAGTAGAGAATGTGACAAGAGAACCTCCCAACAAACTCAAGTTTAACTTCCTTGGTAAAGATTCTATCAAGTATGAAAATACAGTTGAGGTGGAGCTTCCTGTATATAATGCAATATTGAAGTTACAAAAAGATAAACGTCCTGGTGATGATCTTTTTGATAAGCTGGATACAAGTAAATTAAATGCTCATCTGAAGGAACTCATGCCTGGTCTAACAGCAAAAGTCTTCCGTACATTCAATGCATCAATCACATTGGATAATATGTTAAATCAAGAAACTAAAGATGGAGATGTTGGGGAGAAAATTGTTGTTTATCAACATGCAAATAAACAGGTTGCTATAATCTGCAATCATCAACGTAGTGTTTCAAAGTCTCATGATGCACAAATGTCAAAGTTAACTGAAAAAATTGATGAACTTCAGGCTGTTCTGAAGGAGCTGAAAACGGATTTAGACAGGGCAAAAAAAGGAAAACCCCCTTTAAAGAGTTCAGATGGAAAGACAAAAAAGAACTTGACTCCTGAAGTGTTAGAGAAGAAGATATCTCAAACCAATGCAAAAATTGAGAAGATGCAACGTGATATGAAGACAAAAGAAGATTTAAAAACTGTGGCATTAGGCACATCCAAGATAAACTACCTTGACCCTAGGATTACAGTTGCCTGGTGCAAGCGGCATGAGGTTCCTATTGAAAAGATTTTCAATAAGTCTCTGCTGGCGAAATTCTGTTGGGCAATGGATGTGGATCCTGACTTCAGATTCTGA | 2682 | 0.3919 | MAVETSDKPNLPHDFDDDDDAPLIYKRIPSKKNQTHSEARKSNSHIHDGQSYRQAPNAPSSNGQTSSLQKGNTAPSLKPSATKPSVGISRTPNSVGNTSSVKLPVANSKSPSLGDKQKMSVDVKVEPKSTEHSGKGFCEDSEDDEDDKPLSFRLKNSNHDNKATSVVKKSYEDSDDDDDVPLAKKLPRNLNLGTTSNNHEDSDKKPISKIQKERQNGSGMSNKQDRPSPLPAKRPLDNSNSLQPSIKKPKVSASNASIKTKLVSEKRELKTEDDDDDDHIPISQRIKKQGMTGDKSSSTKKVLQKVTKVNKSSSKPFKKQTKKIVKKSGSGSEYSKSSKLLPSSGDGQKKWTTLVHNGVIFPPPYQQHGVKILYKGRPVDLTPEQEEVATMYAVMRDTEYMQKDKFKDNFWNDWRKLLGRNHVIQNLKDCDFTPIYDWYQGVKDKKKQMTTEEKKILKEEKMKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRIHPGDITINIGKDAPIPECPIPGERWKEIRHDNTVTWLAYWSDPINPKLFKYVFLAASSSLKGQSDKEKYEKARMLKDYIENIRSAYTKDFTNKDITKLQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVTREPPNKLKFNFLGKDSIKYENTVEVELPVYNAILKLQKDKRPGDDLFDKLDTSKLNAHLKELMPGLTAKVFRTFNASITLDNMLNQETKDGDVGEKIVVYQHANKQVAIICNHQRSVSKSHDAQMSKLTEKIDELQAVLKELKTDLDRAKKGKPPLKSSDGKTKKNLTPEVLEKKISQTNAKIEKMQRDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFCWAMDVDPDFRF | 893 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vimu5g02704 | 893 | Coils | Coil | 447 | 467 | - | - | |
| Vimu5g02704 | 893 | ProSitePatterns | Eukaryotic DNA topoisomerase I active site. | 839 | 857 | IPR018521 | GO:0003677|GO:0003917|GO:0006265 | |
| Vimu5g02704 | 893 | MobiDBLite | consensus disorder prediction | 234 | 260 | - | - | |
| Vimu5g02704 | 893 | FunFam | DNA topoisomerase I | 564 | 712 | - | - | |
| Vimu5g02704 | 893 | Pfam | C-terminal topoisomerase domain | 825 | 893 | IPR025834 | - | |
| Vimu5g02704 | 893 | Coils | Coil | 820 | 840 | - | - | |
| Vimu5g02704 | 893 | Gene3D | - | 366 | 449 | IPR013034 | GO:0003917|GO:0006265 | |
| Vimu5g02704 | 893 | Gene3D | DNA Topoisomerase I, domain 2 | 346 | 561 | IPR013030 | GO:0003677|GO:0003917|GO:0005694|GO:0006265 | |
| Vimu5g02704 | 893 | MobiDBLite | consensus disorder prediction | 9 | 47 | - | - | |
| Vimu5g02704 | 893 | SUPERFAMILY | Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment | 348 | 563 | IPR036202 | GO:0003677|GO:0003917|GO:0005694|GO:0006265 | |
| Vimu5g02704 | 893 | FunFam | DNA topoisomerase I | 439 | 561 | - | - | |
| Vimu5g02704 | 893 | SUPERFAMILY | DNA breaking-rejoining enzymes | 564 | 890 | IPR011010 | GO:0003677 | |
| Vimu5g02704 | 893 | MobiDBLite | consensus disorder prediction | 261 | 284 | - | - | |
| Vimu5g02704 | 893 | FunFam | DNA topoisomerase I | 713 | 893 | - | - | |
| Vimu5g02704 | 893 | FunFam | DNA topoisomerase I | 365 | 449 | - | - | |
| Vimu5g02704 | 893 | Pfam | Eukaryotic DNA topoisomerase I, catalytic core | 564 | 789 | IPR013500 | GO:0003677|GO:0003917|GO:0006265 | |
| Vimu5g02704 | 893 | MobiDBLite | consensus disorder prediction | 793 | 812 | - | - | |
| Vimu5g02704 | 893 | MobiDBLite | consensus disorder prediction | 1 | 347 | - | - | |
| Vimu5g02704 | 893 | MobiDBLite | consensus disorder prediction | 165 | 184 | - | - | |
| Vimu5g02704 | 893 | SMART | topeu | 490 | 866 | IPR013499 | GO:0003677|GO:0003917|GO:0005694|GO:0006265 | |
| Vimu5g02704 | 893 | MobiDBLite | consensus disorder prediction | 119 | 139 | - | - | |
| Vimu5g02704 | 893 | MobiDBLite | consensus disorder prediction | 48 | 115 | - | - | |
| Vimu5g02704 | 893 | Gene3D | - | 713 | 893 | IPR014727 | GO:0003677|GO:0003917|GO:0005694|GO:0006265 | |
| Vimu5g02704 | 893 | MobiDBLite | consensus disorder prediction | 327 | 347 | - | - | |
| Vimu5g02704 | 893 | CDD | Topo_IB_C | 570 | 763 | IPR013500 | GO:0003677|GO:0003917|GO:0006265 | |
| Vimu5g02704 | 893 | Coils | Coil | 762 | 796 | - | - | |
| Vimu5g02704 | 893 | PRINTS | Eukaryotic DNA topoisomerase I signature | 606 | 625 | IPR001631 | GO:0003677|GO:0003917|GO:0006265 | |
| Vimu5g02704 | 893 | PRINTS | Eukaryotic DNA topoisomerase I signature | 629 | 643 | IPR001631 | GO:0003677|GO:0003917|GO:0006265 | |
| Vimu5g02704 | 893 | PRINTS | Eukaryotic DNA topoisomerase I signature | 846 | 857 | IPR001631 | GO:0003677|GO:0003917|GO:0006265 | |
| Vimu5g02704 | 893 | PRINTS | Eukaryotic DNA topoisomerase I signature | 651 | 667 | IPR001631 | GO:0003677|GO:0003917|GO:0006265 | |
| Vimu5g02704 | 893 | PRINTS | Eukaryotic DNA topoisomerase I signature | 709 | 723 | IPR001631 | GO:0003677|GO:0003917|GO:0006265 | |
| Vimu5g02704 | 893 | PRINTS | Eukaryotic DNA topoisomerase I signature | 490 | 499 | IPR001631 | GO:0003677|GO:0003917|GO:0006265 | |
| Vimu5g02704 | 893 | PANTHER | DNA TOPOISOMERASE I | 121 | 893 | - | - | |
| Vimu5g02704 | 893 | CDD | Topoisomer_IB_N | 350 | 562 | - | - | |
| Vimu5g02704 | 893 | Gene3D | Topoisomerase I; Chain A, domain 3 | 564 | 712 | IPR014711 | GO:0003677|GO:0003917|GO:0006265 | |
| Vimu5g02704 | 893 | MobiDBLite | consensus disorder prediction | 289 | 314 | - | - | |
| Vimu5g02704 | 893 | Pfam | Eukaryotic DNA topoisomerase I, DNA binding fragment | 350 | 561 | IPR008336 | GO:0003677|GO:0003917|GO:0006265 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vimu5g02704 | K03163 | - | gmx:100799837 | 1498.41 |