Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02697 ATGGACACGCTGGCACGCATCTCGAACAACACTCCCATCTCATGCATCCACCCGTTTCGTTCCCAATCCCCTCACTTCCCAACCTCTCTTGCCATATTCCGGGTCGGGCGCGGGTCGTTGACTCCAATTCGGGCGTCCACCACGAGCACGGAGAGAGGGGAAGTTGTATTGCCACCGCAACGCGAGGACGACAAGCAACTGCAGAAGGGAATAGCCGAGTTCTACGACGAGTCGTCTTCCATATGGGAGAATATTTGGGGCGACCACATGCACCATGGCTTCTACGACCCGGATTCCACCGTTTCGGTTTCGGATCATCGAGCGGCTCAGATCCGAATGATCGAAGAGTCGCTTCATTTTGCCTCTATATCTGAGGAGCGTACGAAATGGCCGAAGAGAATAGTTGATGTTGGATGTGGCATAGGAGGCAGTTCCAGATACTTGGCCGAGAAATTTGGGGCAACCAGCGTTGGTATCACTCTCAGTCCTGTTCAAGCTCAGAGAGCTAATGCTCTTGCTGCAGCTCAAGGATTGGCTCACAAGGTTTCTTTTCAGGTTGCTGACGCTCTGCAGCAACCATTCCCTGATGGGCAGTTTGATCTGGTGTGGTCCATGGAGAGTGGAGAGCATATGCCTGACAAAACTAAGTTTGTCGGAGAGTTAGCTCGGGTAGCAGCACCAGGTGGCACCATAATAATCGTAACATGGTGCCACAGGGATCTTGGCCCTGAAGAACAATCCCTACAACCATGGGAACAAGATCTGTTGAAGAAGATTTGTGATGCGTATTATCTTCCAGCTTGGTGCTCAGCTGCTGATTATATCAAATTGCTTCGGTCCTTGTCACTTCAGGACATCAAGTCAGAAGATTGGTCTCGCTTTGTTGCCCCATTTTGGCCTGCAGTGATACGCTCCGCCTTGACATGGAAGGGTCTCACTTCACTCTTGAGCAGTGGACAAAAAACGATAAAAGGAGCTTTGGCCATGCCATTGATGATAGAAGGATACAAGAAGGGTCTCATTAAGTTTGCGATCATTACATGTCGAAAACCTGAATAA 1059 0.5005 MDTLARISNNTPISCIHPFRSQSPHFPTSLAIFRVGRGSLTPIRASTTSTERGEVVLPPQREDDKQLQKGIAEFYDESSSIWENIWGDHMHHGFYDPDSTVSVSDHRAAQIRMIEESLHFASISEERTKWPKRIVDVGCGIGGSSRYLAEKFGATSVGITLSPVQAQRANALAAAQGLAHKVSFQVADALQQPFPDGQFDLVWSMESGEHMPDKTKFVGELARVAAPGGTIIIVTWCHRDLGPEEQSLQPWEQDLLKKICDAYYLPAWCSAADYIKLLRSLSLQDIKSEDWSRFVAPFWPAVIRSALTWKGLTSLLSSGQKTIKGALAMPLMIEGYKKGLIKFAIITCRKPE 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02697 352 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 66 351 IPR029063 -
Vimu5g02697 352 ProSiteProfiles SAM-dependent methyltransferase gamma-tocopherol (gTMT)-type family profile. 58 352 IPR025774 GO:0008168|GO:0032259
Vimu5g02697 352 Pfam Methyltransferase domain 135 233 IPR013216 GO:0008168
Vimu5g02697 352 PANTHER METHYLTRANSFERASE 77 317 - -
Vimu5g02697 352 Gene3D Vaccinia Virus protein VP39 76 351 IPR029063 -
Vimu5g02697 352 CDD AdoMet_MTases 133 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02697 Vimu-Chr5 36810053 36812628 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02697 132 237 Acyl Lipid Metabolism Gene Families AT1G73600 37.736 7.44e-18 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02697 K05928 - gmx:732543 579.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02697 5 36810053 36812628 Vimu5g02697 5 36810053 36812628 ECH