Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02690 ATGGGAGTTGCTGGATTTGAAATCAGTGGGAATTCTGCTTCTGCTTCTGTTTTGCATTTTGGTGCCAATTCGTTATCTTCCTATAAGGTTCCTATTTCTCTGAGACCCTTTTTTGGGAATGCTTTGAACGCGAGGTTTACGGGGAAAATTCGGGTTTCTCAGACTCAGAAGCCGAATTTCGGTGCAGTTTCTGCTTCACTGAATGGTGGTGGCTCTAATGTTGGGTTGATTAGTGATGCGATTCTGCCGAAGGACTCAGAATTTAAGCCTTCCTTTGACGAGTATTTGAAGGCTATGGAATCTGCCAGAACTGAGAGGGGCAAGAAGCGTGCTGCCACTGCTAGAAAACAGAAGACGGCGGAAAAGGGTGATAATAGCACCGCAAAAGTTAGCAGTGCAAGAGTGAAAATTGAGAGAAAAAATGGGCATGAAGGTGCCGAAGAAGGTTCCTCCAGAAGTAGTGGCAAGGTCAGAAGATCAGCTACTAAAGGATTTAGAAGTGAAAACGATGGGAAAGAAAATGACCTTGATGTAAAGGGAAAGCAGAAAAATGGGTCGTTGAAACGCCAGAGCCATAGTTTAGAATCAAAGTCTAAGAGTATAGTTAGGTCTAGTTTGAATGGTAGCCGTGGGAGTGTCACAAAGAGGGAAGTTATTCATGATTTATATTCTTCAAAGATTGTGGGAGAGAAGGTTGTTGGTAGCAGACAAAGGGATTATAACACACAGGGTAGAATCCCTGATAGAGCTCTAACACAAAATGTTCAAGACAAAGGGATTGTAAGAAGACACAGCGAGAGTGGAAGTTTTATAAATAGAAATGGTCTGTCTAATGTGAAAATGAATGGAGGCCGCAAGCGTTTCATTGACAGGGGTTATGATTCTGACATTTCGGAGGTGGAACGAGCAGCATTTGAGAATCTGGAAGACCCGAACCAGGTTATCAGAAAGTCACAATTTTCACACAAGGAAATGGAGGAGAAAATCCAAAAGCTAGCCAATTCGGAACAATTGAAGCTATCTACAGAGAAAGCTCAGTGCCTAGACTTGCGTATGATATTTAGCCAGTCAGCAATTCACGAGCCGGGGAAATTACACTTAACGCCCATAAAAGCTCTAAATGACAGCCCCTGTCTGAAATGGCTGGTGTTAAATGGTGCAGACATCAATTTACCTGAATGGATATTTTCTAAGATGATCAGAAGTGCAAGGCTTAAATTTTCTGACTATTCCATAACAAGGATTATCACAATCTTGGGAAAACTAGGAAACTGGCAGCGAGTGATTCAGGTGATTGAATGGCTTCAAAAGCGTGAACGTTTCAAGTCCACTAAGCTAAGGAATATATATACCGCTGCTCTTGTTGCACTTGGAAAGTCCAGGAGACCTGTTGAGGCACTAAATATATTTCATGCAATGCAGCAACAAATGTCCTCGTATCCTGATTTAGTAGCTTATCAGAGCATTGCTGTGACTCTTGGACAAGCAGGGCATATGAAGGAGCTCTTTGATGTGATTGATATTATGCGATCACCACCAAAGAAAAAGTTTAAAACAGGGGTATTTAAGAGCTGGGACCCAAGGCTGGAACCAGATATTGTAGTCTATCATTCAGTGCTTAACGCTTGTGTTAAGCAGAAACAATGGGAAGGAGCCTTTTGGGTTTTGCAGCAGTTAAAGAAGCAAGGACAACAACCTTCTGCCACAACTTACGGCCTAGTCATGGAGGTGATGCTTTCATGTGGCAAGTACAACTTGGTTCATGAATTTTTCAGAAAACTTCAGAAGTCTTTCGTTCCTAATTCATTGACGTATAGAGTTCTTGTAAATACACTGTGGAAAGAGGGGAAAAGCGATGAGGCTATATTGGCTGTCCAAGAAATGGAAAATCGTGGAATTGTAGGTTCCGCTTCCCTTTATTATGATCTGGCTCGATGCCTCTGTGCAGCTGGAAGAAGTCACGAGGCACTAAAGCAGATAGACAAGATATGCAAGGTTGCAAATAAACCACTGGTAGTGACCTACACTGGTTTGATGCAAGCAAGTCTAGACTCTGGAAATATTCAAGATGGGGCTTATATTTTTGAGAAAATGAAGGAAGTTTGTGCTCCAAACTTGGTTACATATAACATATTGCTGAAATCTTACTTGGAACATGGCATGTTTCAAGAAGCTAAAGCGTTGTTTGAGCAGATGTCAGAAAATGCAAATTGTCTGAGGGGAAATACTGATTACAAGATGCTGGTGGTACCAGATACATACACATTCAACACCATGTTAGATGCATGTGTTTCAGAGCAGAGATGGGATTATTTTGATCATGTCTATCAAAAGATGTTGTACCATGGTTATCACTTCAATCCAAAACGTCATCTTCAAATGATATTGGATGCTTCAAGAGCGGGAAAGGAACGGCCTTTGGAAATAACATGGAAACACTTAACCGACATGGATCGAACTATTCCAACTTCTCTGATCAAGGAGAGGTTTTGTTCTAAGCTTGAGAGAGAAGACTATCTTTCTGCTCTCACATGTATGACCAGCAATCTCCCAAAAGAGTCGCAGCCATTTTCCAAATCATCTTGGTTGAAACTATTAAAGAATAATTCTCACCGGTTTCAGAAGGAAACGATTGTTAGACTAATGAACGAGGCCAGCAAAATGGTTTCCAATGGAAGTTTACCAAATCCAACACTTGAGTATTTGATACAATCATGTAAAAAAATTCTTTTTGCCACTGAAATCAGTGAAGTTGACATGGATTCAATGAAAAATGTAGTTGAAGTTGAAGTAGAGAATAAGCTGGTCATGGCCAACTTTAGATGA 2826 0.4098 MGVAGFEISGNSASASVLHFGANSLSSYKVPISLRPFFGNALNARFTGKIRVSQTQKPNFGAVSASLNGGGSNVGLISDAILPKDSEFKPSFDEYLKAMESARTERGKKRAATARKQKTAEKGDNSTAKVSSARVKIERKNGHEGAEEGSSRSSGKVRRSATKGFRSENDGKENDLDVKGKQKNGSLKRQSHSLESKSKSIVRSSLNGSRGSVTKREVIHDLYSSKIVGEKVVGSRQRDYNTQGRIPDRALTQNVQDKGIVRRHSESGSFINRNGLSNVKMNGGRKRFIDRGYDSDISEVERAAFENLEDPNQVIRKSQFSHKEMEEKIQKLANSEQLKLSTEKAQCLDLRMIFSQSAIHEPGKLHLTPIKALNDSPCLKWLVLNGADINLPEWIFSKMIRSARLKFSDYSITRIITILGKLGNWQRVIQVIEWLQKRERFKSTKLRNIYTAALVALGKSRRPVEALNIFHAMQQQMSSYPDLVAYQSIAVTLGQAGHMKELFDVIDIMRSPPKKKFKTGVFKSWDPRLEPDIVVYHSVLNACVKQKQWEGAFWVLQQLKKQGQQPSATTYGLVMEVMLSCGKYNLVHEFFRKLQKSFVPNSLTYRVLVNTLWKEGKSDEAILAVQEMENRGIVGSASLYYDLARCLCAAGRSHEALKQIDKICKVANKPLVVTYTGLMQASLDSGNIQDGAYIFEKMKEVCAPNLVTYNILLKSYLEHGMFQEAKALFEQMSENANCLRGNTDYKMLVVPDTYTFNTMLDACVSEQRWDYFDHVYQKMLYHGYHFNPKRHLQMILDASRAGKERPLEITWKHLTDMDRTIPTSLIKERFCSKLEREDYLSALTCMTSNLPKESQPFSKSSWLKLLKNNSHRFQKETIVRLMNEASKMVSNGSLPNPTLEYLIQSCKKILFATEISEVDMDSMKNVVEVEVENKLVMANFR 941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02690 941 PANTHER OS01G0674700 PROTEIN 64 925 IPR044645 GO:0009658
Vimu5g02690 941 MobiDBLite consensus disorder prediction 102 123 - -
Vimu5g02690 941 NCBIfam pentatricopeptide repeat 534 567 IPR002885 -
Vimu5g02690 941 NCBIfam pentatricopeptide repeat 754 780 IPR002885 -
Vimu5g02690 941 NCBIfam pentatricopeptide repeat 707 735 IPR002885 -
Vimu5g02690 941 Gene3D Tetratricopeptide repeat domain 654 814 IPR011990 GO:0005515
Vimu5g02690 941 MobiDBLite consensus disorder prediction 133 154 - -
Vimu5g02690 941 MobiDBLite consensus disorder prediction 102 212 - -
Vimu5g02690 941 FunFam Pentatricopeptide repeat-containing protein 380 521 - -
Vimu5g02690 941 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 705 735 IPR002885 -
Vimu5g02690 941 Pfam PPR repeat 754 783 IPR002885 -
Vimu5g02690 941 Pfam PPR repeat 604 633 IPR002885 -
Vimu5g02690 941 Pfam PPR repeat 450 475 IPR002885 -
Vimu5g02690 941 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 532 566 IPR002885 -
Vimu5g02690 941 Pfam Pentatricopeptide repeat domain 529 578 IPR002885 -
Vimu5g02690 941 Pfam Pentatricopeptide repeat domain 671 716 IPR002885 -
Vimu5g02690 941 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 601 635 IPR002885 -
Vimu5g02690 941 MobiDBLite consensus disorder prediction 161 196 - -
Vimu5g02690 941 SUPERFAMILY TPR-like 517 735 IPR011990 GO:0005515
Vimu5g02690 941 Gene3D Tetratricopeptide repeat domain 387 520 IPR011990 GO:0005515
Vimu5g02690 941 Gene3D Tetratricopeptide repeat domain 521 622 IPR011990 GO:0005515
Vimu5g02690 941 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 752 786 IPR002885 -
Vimu5g02690 941 MobiDBLite consensus disorder prediction 197 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02690 Vimu-Chr5 36772191 36779103 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02690 552 802 Glycosyltransferase AT1G05670 20.392 1.46e-10 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02690 - - gmx:100787028 1306.2