Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02682 ATGAAACCTTACCTACAGACACGGATGAATTTCAAAAACGTGAATGTCCCTAAGGTTCCTGGTGGTGGAATCGCTGCTTTGCTGAAAGCTAGCATCATCGGTGGGATTGCTGTGTATGGGGCTGCAAACAGTTTGTACAATGTTGACGGAGGTCATCGAGCCATTGTGTTCAATCGCATTCTTGGTGTCAAAGACCAGGTCTATCCTGAAGGGACGCATGTTATGATTCCTTGGTTTGAGAGGCCCGTGATCTATGACGTTCGTGCACGACCTCATTTAGTAGAGAGTACTTCAGGGAGCCGTGATCTTCAAATGGTGAAAATTGGACTTAGAGTCCTAACACGCCCTGTTCCAGACCAACTGCCGACAATTTATCGAACCCTGGGTGAGAATTATAATGAAAGGGTGCTGCCTTCTATTATACATGAAACTCTCAAAGCTGTAGTTGCACAGTACAATGCCAGTCAGCTCATTACTCAGAGAGAGACCGTCAGTCGAGAAATAAGGAGGATATTGACTGAGAGGGCCTCCCATTTTAACATTGCTTTGGATGATGTGTCAATCACAAGTTTGTCATTTGGGAAGGAATTTACAGCTGCCATTGAAGCCAAGCAGGTTGCTGCTCAAGAAGCTGAGAGAGCTAAATTTGTTGTTGAAAAAGCTGAACAAGACAAAAGAAGTGCTGTTATTAGAGCTCAGGGTGAAGCCAAGAGTGCCCAGTTGATTGGTCAAGCTATAGCCAACAATCCTGCATTTATCACCTTAAGGAAAATTGAAGCTGCAAGGGAAATTGCTCAAACGATTTCAAATTCTGCCAACAAGGTTTTCTTGAATTCGGATGATCTCTTACTCAATCTCCAGGAGTTCAATTTGGAGGCCAGTGGGAAGAAGAGATAG 897 0.4415 MKPYLQTRMNFKNVNVPKVPGGGIAALLKASIIGGIAVYGAANSLYNVDGGHRAIVFNRILGVKDQVYPEGTHVMIPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVPDQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRRILTERASHFNIALDDVSITSLSFGKEFTAAIEAKQVAAQEAERAKFVVEKAEQDKRSAVIRAQGEAKSAQLIGQAIANNPAFITLRKIEAAREIAQTISNSANKVFLNSDDLLLNLQEFNLEASGKKR 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02682 298 PANTHER PROHIBITIN 9 292 IPR000163 GO:0016020
Vimu5g02682 298 Gene3D Band 7 domain 73 207 IPR036013 -
Vimu5g02682 298 SMART PHB_4 44 205 IPR001107 -
Vimu5g02682 298 Pfam SPFH domain / Band 7 family 47 222 IPR001107 -
Vimu5g02682 298 Coils Coil 204 224 - -
Vimu5g02682 298 SUPERFAMILY Band 7/SPFH domain 76 212 IPR036013 -
Vimu5g02682 298 CDD SPFH_prohibitin 45 239 IPR000163 GO:0016020
Vimu5g02682 298 PRINTS Prohibitin signature 88 104 IPR000163 GO:0016020
Vimu5g02682 298 PRINTS Prohibitin signature 223 239 IPR000163 GO:0016020
Vimu5g02682 298 PRINTS Prohibitin signature 200 223 IPR000163 GO:0016020
Vimu5g02682 298 PRINTS Prohibitin signature 106 125 IPR000163 GO:0016020
Vimu5g02682 298 PRINTS Prohibitin signature 175 194 IPR000163 GO:0016020
Vimu5g02682 298 PRINTS Prohibitin signature 152 168 IPR000163 GO:0016020
Vimu5g02682 298 PRINTS Prohibitin signature 129 147 IPR000163 GO:0016020
Vimu5g02682 298 FunFam Prohibitin 2 73 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02682 Vimu-Chr5 36704603 36708813 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02682 K17081 - gmx:100811958 523.087